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The map label for this gene is dapB [H]

Identifier: 138895763

GI number: 138895763

Start: 2252220

End: 2253017

Strand: Reverse

Name: dapB [H]

Synonym: GTNG_2119

Alternate gene names: 138895763

Gene position: 2253017-2252220 (Counterclockwise)

Preceding gene: 138895764

Following gene: 138895762

Centisome position: 63.46

GC content: 55.14

Gene sequence:

>798_bases
ATGACGATTCGCATCGTCATTGCCGGGCCACGCGGCCGCATGGGCCGTGAAGCGGTGGCACTTGTGCAAAGAACAGACCA
TTTTGAACTGGCTGCGGTCATTGACCGCCGCTATGACGGGCAAAATTTGGCCGACATCGATGGATTTGCCGGCATCGACG
CTCCGATTTATACTGATGCTGTCCGCTGCTTTACCGAGGTGAAGCCGGATGTGCTCATCGATTTAACGACGCCCGAGGTC
GGAAAACGACATGCTGAACTGGCGCTGCGCTACGGCGTCCGTCCAGTCATCGGCACGACCGGGTTCACGCCGGAAGATAT
CGAGCGGCTGACGGAGCTCGCTGAGACGAACGAAATCGGTGCGATCATTGCCCCGAACTTTGCTGTCGGCGCGGTGCTGA
TGATGAAGTTTGCCCGCATGGCGGCAAAATATTTCACTGATGTAGAAATTATCGAACTACATCATGACCAAAAGCTTGAC
GCGCCATCAGGGACGGCCCTGAAAACCGCACAGCTTATCGCTGAAGTGCGTCCGTCGAAAAAACAAGGCCATCCGGATGA
AAAAGAAACGCTTGCCGGCGCACGTGGGGCTGCATACGACGGCATTCCGATTCATAGCGTTCGCCTGCCAGGGTTTGTCG
CCCATCAGGAAGTCATTTTCGGCGGCGAGGGACAGACGCTGACAATCCGCCATGATTCACTCGACCGCCGCTCATTCATG
TCTGGAGTGAAACTAGCGGTGGAAACGGTTATGCATTTACATACGCTCGTCTACGGGCTTGAACATATTTTGGAATAG

Upstream 100 bases:

>100_bases
CCAATTCGCTCAACATTGATTTGCAGGAGGCGCACGACCGGGTGATGGACAAGTTCCGGATCCGCGACCGTGACCGTTGG
ACGCGAAAGGAGGAATCTCA

Downstream 100 bases:

>100_bases
CGCAAACAGCGCAAACGGGGGAGAGAACAAGATGAAAATCGCGTTAATTGCCCATGACGAAAAAAAGGCGGAGATGGTGG
CGTTTGCGACCGCCTACGCG

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTIRIVIAGPRGRMGREAVALVQRTDHFELAAVIDRRYDGQNLADIDGFAGIDAPIYTDAVRCFTEVKPDVLIDLTTPEV
GKRHAELALRYGVRPVIGTTGFTPEDIERLTELAETNEIGAIIAPNFAVGAVLMMKFARMAAKYFTDVEIIELHHDQKLD
APSGTALKTAQLIAEVRPSKKQGHPDEKETLAGARGAAYDGIPIHSVRLPGFVAHQEVIFGGEGQTLTIRHDSLDRRSFM
SGVKLAVETVMHLHTLVYGLEHILE

Sequences:

>Translated_265_residues
MTIRIVIAGPRGRMGREAVALVQRTDHFELAAVIDRRYDGQNLADIDGFAGIDAPIYTDAVRCFTEVKPDVLIDLTTPEV
GKRHAELALRYGVRPVIGTTGFTPEDIERLTELAETNEIGAIIAPNFAVGAVLMMKFARMAAKYFTDVEIIELHHDQKLD
APSGTALKTAQLIAEVRPSKKQGHPDEKETLAGARGAAYDGIPIHSVRLPGFVAHQEVIFGGEGQTLTIRHDSLDRRSFM
SGVKLAVETVMHLHTLVYGLEHILE
>Mature_264_residues
TIRIVIAGPRGRMGREAVALVQRTDHFELAAVIDRRYDGQNLADIDGFAGIDAPIYTDAVRCFTEVKPDVLIDLTTPEVG
KRHAELALRYGVRPVIGTTGFTPEDIERLTELAETNEIGAIIAPNFAVGAVLMMKFARMAAKYFTDVEIIELHHDQKLDA
PSGTALKTAQLIAEVRPSKKQGHPDEKETLAGARGAAYDGIPIHSVRLPGFVAHQEVIFGGEGQTLTIRHDSLDRRSFMS
GVKLAVETVMHLHTLVYGLEHILE

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=277, Percent_Identity=32.129963898917, Blast_Score=101, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29070; Mature: 28939

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRIVIAGPRGRMGREAVALVQRTDHFELAAVIDRRYDGQNLADIDGFAGIDAPIYTDA
CEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
VRCFTEVKPDVLIDLTTPEVGKRHAELALRYGVRPVIGTTGFTPEDIERLTELAETNEIG
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCCC
AIIAPNFAVGAVLMMKFARMAAKYFTDVEIIELHHDQKLDAPSGTALKTAQLIAEVRPSK
EEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC
KQGHPDEKETLAGARGAAYDGIPIHSVRLPGFVAHQEVIFGGEGQTLTIRHDSLDRRSFM
CCCCCCHHHHHHCCCCCCCCCCCEEEEECCCEEECCEEEECCCCCEEEEECCCCHHHHHH
SGVKLAVETVMHLHTLVYGLEHILE
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIRIVIAGPRGRMGREAVALVQRTDHFELAAVIDRRYDGQNLADIDGFAGIDAPIYTDA
EEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
VRCFTEVKPDVLIDLTTPEVGKRHAELALRYGVRPVIGTTGFTPEDIERLTELAETNEIG
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCCC
AIIAPNFAVGAVLMMKFARMAAKYFTDVEIIELHHDQKLDAPSGTALKTAQLIAEVRPSK
EEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC
KQGHPDEKETLAGARGAAYDGIPIHSVRLPGFVAHQEVIFGGEGQTLTIRHDSLDRRSFM
CCCCCCHHHHHHCCCCCCCCCCCEEEEECCCEEECCEEEECCCCCEEEEECCCCHHHHHH
SGVKLAVETVMHLHTLVYGLEHILE
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA