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The map label for this gene is dnaD [H]

Identifier: 138895749

GI number: 138895749

Start: 2238045

End: 2238752

Strand: Reverse

Name: dnaD [H]

Synonym: GTNG_2105

Alternate gene names: 138895749

Gene position: 2238752-2238045 (Counterclockwise)

Preceding gene: 138895750

Following gene: 138895748

Centisome position: 63.06

GC content: 50.28

Gene sequence:

>708_bases
ATGGAAAAGAAAAAGGTGGCCGAATGGCTGGCGCAAGGAAGCGTCGTCGTTCCGAAACTGTTGCTGGACCATTATAAGCA
GCTTGGCTTGAGCGAAGGGGAGCTCGTTTTGCTTTTGCATATGCAATCGTTTTTGGAAGAAGGCATCGTCTTCCCGACAC
CGGCTGAGCTGGCTGAAAAAATGACTGTTTCGGCGGCAGAATGTATGGAGATGGTGCGTCGGCTTTTGCAAAAAGGAATG
GTCGGCATTGAGGAGCATACGGACGAACGTGGCGTTCGCGGCGAAAAATATACATTGGAACCGCTCTGGGAACAGTTGGT
ACATCATTTGTACGCACAGACCGTCAAAGACGGGCAAATCGGTCAGCAAAAAGAAGAAGAAAGCTTGTATACGATATTTG
AGCAGGAGTTTGGCCGCCCGCTTTCCCCATTTGAGTGCGAAACACTCTCGATGTGGATCGACCAGGACGGTCATGAGCCG
GCCATCATTAAGGCAGCACTGCGCGAGGCGGTGCTATCAGGGAAATTGAATTTCCGCTACATTGACCGCATTTTGTTCGA
GTGGAAAAAGAATGGAATCCGGACGATCGAACAGGCGCACGATTACGGCAAAAAATTCCGCAAGCCGAAATCGTCCGCCC
GCCCGGTGAAACAAGCGACAGGGGAATTTAAGCAGACGATTCCGTTTTTTAACTGGCTTGACTCATAA

Upstream 100 bases:

>100_bases
TTCCGCGGTTGCTCAACCGTCTATACCCGTAAAAAAACCCCCTGCAAAAAGGGGGTTTTTTCGCTAGTGTCATGTTATAC
TATAGTTGAGGTGCATCGGC

Downstream 100 bases:

>100_bases
ACGAGAGGCATTGTCTCTCGTTTTTGTTTGGCCAACATGGACAGATGGACCGAAGATGGCGAAAGGAGAAGGAAACCGGT
GTTGACAAAGCAGCAAATTC

Product: DNA replication protein DnaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MEKKKVAEWLAQGSVVVPKLLLDHYKQLGLSEGELVLLLHMQSFLEEGIVFPTPAELAEKMTVSAAECMEMVRRLLQKGM
VGIEEHTDERGVRGEKYTLEPLWEQLVHHLYAQTVKDGQIGQQKEEESLYTIFEQEFGRPLSPFECETLSMWIDQDGHEP
AIIKAALREAVLSGKLNFRYIDRILFEWKKNGIRTIEQAHDYGKKFRKPKSSARPVKQATGEFKQTIPFFNWLDS

Sequences:

>Translated_235_residues
MEKKKVAEWLAQGSVVVPKLLLDHYKQLGLSEGELVLLLHMQSFLEEGIVFPTPAELAEKMTVSAAECMEMVRRLLQKGM
VGIEEHTDERGVRGEKYTLEPLWEQLVHHLYAQTVKDGQIGQQKEEESLYTIFEQEFGRPLSPFECETLSMWIDQDGHEP
AIIKAALREAVLSGKLNFRYIDRILFEWKKNGIRTIEQAHDYGKKFRKPKSSARPVKQATGEFKQTIPFFNWLDS
>Mature_235_residues
MEKKKVAEWLAQGSVVVPKLLLDHYKQLGLSEGELVLLLHMQSFLEEGIVFPTPAELAEKMTVSAAECMEMVRRLLQKGM
VGIEEHTDERGVRGEKYTLEPLWEQLVHHLYAQTVKDGQIGQQKEEESLYTIFEQEFGRPLSPFECETLSMWIDQDGHEP
AIIKAALREAVLSGKLNFRYIDRILFEWKKNGIRTIEQAHDYGKKFRKPKSSARPVKQATGEFKQTIPFFNWLDS

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 27122; Mature: 27122

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKKVAEWLAQGSVVVPKLLLDHYKQLGLSEGELVLLLHMQSFLEEGIVFPTPAELAEK
CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHH
MTVSAAECMEMVRRLLQKGMVGIEEHTDERGVRGEKYTLEPLWEQLVHHLYAQTVKDGQI
HHHHHHHHHHHHHHHHHHCCCCCHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
GQQKEEESLYTIFEQEFGRPLSPFECETLSMWIDQDGHEPAIIKAALREAVLSGKLNFRY
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH
IDRILFEWKKNGIRTIEQAHDYGKKFRKPKSSARPVKQATGEFKQTIPFFNWLDS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKKKVAEWLAQGSVVVPKLLLDHYKQLGLSEGELVLLLHMQSFLEEGIVFPTPAELAEK
CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHH
MTVSAAECMEMVRRLLQKGMVGIEEHTDERGVRGEKYTLEPLWEQLVHHLYAQTVKDGQI
HHHHHHHHHHHHHHHHHHCCCCCHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
GQQKEEESLYTIFEQEFGRPLSPFECETLSMWIDQDGHEPAIIKAALREAVLSGKLNFRY
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH
IDRILFEWKKNGIRTIEQAHDYGKKFRKPKSSARPVKQATGEFKQTIPFFNWLDS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]