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The map label for this gene is yliC [C]

Identifier: 138895642

GI number: 138895642

Start: 2112399

End: 2113349

Strand: Reverse

Name: yliC [C]

Synonym: GTNG_1998

Alternate gene names: 138895642

Gene position: 2113349-2112399 (Counterclockwise)

Preceding gene: 138895643

Following gene: 138895641

Centisome position: 59.53

GC content: 39.85

Gene sequence:

>951_bases
TTGAAAGCATATATAGTAACTAGGATTCTATCTCTAATCCCTGTGTTACTAGTTGTTGCCATTGTTGCTTTTTTTCTTAT
TCATCTGACACCGGGAGATCCAGCTGCTGTCATGCTTGGATCACAGGCCACTCCTGAAGAAGTGGAACAATTGCGTGAGC
AATTAGGTCTGAATCTTCCGCTTTATGAACAGTTTGCAAATTGGTTTTTCGGACTTTTACAAGGAGATTTTGGATGGTCC
ATTTATTATAATAAACCAGTTTTAACCGTATTTTTAGAGCATTTGGGTCCGACCCTTTCCTTAGCTGTTTTGGCTCAAGC
GATTTCTATGGTATTAGCTATTCCTATGGGGATTTCTGCCGCAAGAAAAAGAGGGACGAAAATCGACCAAATATTTATGG
CTCTAGTGATGTTAGGTATGGCTATACCCAGCTTTTTAATGGGGTTATTCTTAATGCAGTTATTTGCATTAAAACTCAAA
TTATTTCCAGTGGCGGGTTATGAACCACTAAGTTCCGGTTTATGGAATCATTTAAAATTTATGATTTTACCTGCTACGGC
ACTAGGCATTATTCAAACCGCCATCATCGCTCGAATGACTCGATCGTCTATGCTGGATGTACTCAGTGCCAACTTTATTA
AAACAGCCTATGCGAAAGGGGTTAAAGAAAAAGTCATTGTTTATAAACATGCCCTTCGTAATGCGGCCATTCCAATCCTA
ACCGTTCTTGGACAAGAATTCGGCACGTTAATTGCTGGTGCCGTAGTAACGGAAACGGTATTTAACTTACCTGGGATCGG
TCAGTTAGTCATTCACGCCATTGAAAAACGGGATTATGCCGTCATTCAAGGAACAATTTTGCTTGCAGCATTGTCATATT
TATTGGTGAACCTCATTGTTGACTTATTGTACGGTATTGTCGATCCAAGAGTTCGTTTTGGCCGTAAGTAA

Upstream 100 bases:

>100_bases
TCTTTTTAAGTACGTGTTGTGGTGAAGATCCACTCAAAATATCCCACCCCAAATTATGAAAGATGGAGTACCAATGATTG
TACAGAGGGAGTGTTAATCT

Downstream 100 bases:

>100_bases
GGGAAGGGAGAATCACAGAAAGATTACTTGACTTTTTATTTTACCTCGATCGAACAAAATGGAAAAAAGGACCTATTATA
AAGGGTGTTTTTGTCAAATA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKAYIVTRILSLIPVLLVVAIVAFFLIHLTPGDPAAVMLGSQATPEEVEQLREQLGLNLPLYEQFANWFFGLLQGDFGWS
IYYNKPVLTVFLEHLGPTLSLAVLAQAISMVLAIPMGISAARKRGTKIDQIFMALVMLGMAIPSFLMGLFLMQLFALKLK
LFPVAGYEPLSSGLWNHLKFMILPATALGIIQTAIIARMTRSSMLDVLSANFIKTAYAKGVKEKVIVYKHALRNAAIPIL
TVLGQEFGTLIAGAVVTETVFNLPGIGQLVIHAIEKRDYAVIQGTILLAALSYLLVNLIVDLLYGIVDPRVRFGRK

Sequences:

>Translated_316_residues
MKAYIVTRILSLIPVLLVVAIVAFFLIHLTPGDPAAVMLGSQATPEEVEQLREQLGLNLPLYEQFANWFFGLLQGDFGWS
IYYNKPVLTVFLEHLGPTLSLAVLAQAISMVLAIPMGISAARKRGTKIDQIFMALVMLGMAIPSFLMGLFLMQLFALKLK
LFPVAGYEPLSSGLWNHLKFMILPATALGIIQTAIIARMTRSSMLDVLSANFIKTAYAKGVKEKVIVYKHALRNAAIPIL
TVLGQEFGTLIAGAVVTETVFNLPGIGQLVIHAIEKRDYAVIQGTILLAALSYLLVNLIVDLLYGIVDPRVRFGRK
>Mature_316_residues
MKAYIVTRILSLIPVLLVVAIVAFFLIHLTPGDPAAVMLGSQATPEEVEQLREQLGLNLPLYEQFANWFFGLLQGDFGWS
IYYNKPVLTVFLEHLGPTLSLAVLAQAISMVLAIPMGISAARKRGTKIDQIFMALVMLGMAIPSFLMGLFLMQLFALKLK
LFPVAGYEPLSSGLWNHLKFMILPATALGIIQTAIIARMTRSSMLDVLSANFIKTAYAKGVKEKVIVYKHALRNAAIPIL
TVLGQEFGTLIAGAVVTETVFNLPGIGQLVIHAIEKRDYAVIQGTILLAALSYLLVNLIVDLLYGIVDPRVRFGRK

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=40.2555910543131, Blast_Score=260, Evalue=8e-71,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=38.9380530973451, Blast_Score=249, Evalue=1e-67,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=37.1428571428571, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1787497, Length=318, Percent_Identity=38.3647798742138, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=37.8048780487805, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1788504, Length=368, Percent_Identity=28.804347826087, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=30.8823529411765, Blast_Score=141, Evalue=6e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34652; Mature: 34652

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCHHHHCCCC
>Mature Secondary Structure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HHHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]