| Definition | Geobacillus thermodenitrificans NG80-2 chromosome, complete genome. |
|---|---|
| Accession | NC_009328 |
| Length | 3,550,319 |
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The map label for this gene is oppD [C]
Identifier: 138895640
GI number: 138895640
Start: 2110337
End: 2111320
Strand: Reverse
Name: oppD [C]
Synonym: GTNG_1996
Alternate gene names: 138895640
Gene position: 2111320-2110337 (Counterclockwise)
Preceding gene: 138895641
Following gene: 138895639
Centisome position: 59.47
GC content: 39.84
Gene sequence:
>984_bases ATGGCGAACAGCAACTTATTGGAAATAAAAGATTTAAAAACTTCTTTTTTAACAGAGCGTGGTTTAGTTACGGCTGTGGA TGGAGTCAGTTTTTCCATCAAACCTGGTGAAACATTAGGTGTGGTCGGTGAGTCAGGATGCGGTAAAAGTGTGACAGCAG CATCTATTATGAGGCTGTTAAATAAAGATTCTACTATTTACGAAGGAGAAATTATATACAAAGGGAAAAATTTACTCAAG TTATCTGAGAAAGAAATGAGAGAGATTCGTGGGAATGAAATTTCTATTATATTCCAAGATGCGATGACCTCACTGAATCC GGTCTATACGATCGGTGATCAGATTGCTGAATCGCTTATGATTCATAGAAAATTAAACAAAAGGCAAGCTTATGAAGAAG CCATAGAGATGCTAAGAATGACAGGCATTCCGGCTCCTGAGAAGAGAGTTCATGAGTATCCTCATGAATTATCAGGAGGA ATGAGACAGAGGGCGATGATCGCTATGGCTCTTTCATGCAGGCCAAGCCTTTTAATTGCCGATGAGCCGACTACTGCACT GGATGTCACAATACAGGCGCAGATATTAGATTTGATTAATGATTTAAAAGAAGAGCTAAATATGAGTGTCATGATGATTA CGCATGACCTGGGAGTTGTTGCTGAGGTTTGTACACGCGTTGTCGTGATGTATTTAGGGCAAGTCATCGAGGAAACGGAT GTAGAATCTTTGTTTGATCAGCCGCTCCATCCTTATACAAAGGGATTGTTGGAGTGTATCCCTCAGCTTGAAGATGACCG TTCAAAGCGACTTTTTACAATAAAAGGGATTGTCCCTTCGTTAGATAACGTTCCGAAAGGATGTCGATTTGCTCAAAGAT GTCCTTATGTAGATGAACAATGCATGAGTGAATCACCTGACTTAAAAGAAGTCAGCCAAGGTCATAAAGTGCGATGTTGG AATTATGATAAAATATCATCGTGA
Upstream 100 bases:
>100_bases GATTAAATTTGTTGGGGGATGGATTAAGAGATTTATTAGATCCCCATACAAGTAAAGCGAATAAAAAATTAAAGTAAAAC AAGGAAAGGTGCCGGATAAC
Downstream 100 bases:
>100_bases GGGGAAGAAGGATTTTATGTTGGAAACACGCATGGAACAAGAACAACTTCAGTCAACAACTCCTATTTTGAGGGTCAAGA ATTTAAAAAAGCATTATCCA
Product: oligopeptide ABC transporter ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 327; Mature: 326
Protein sequence:
>327_residues MANSNLLEIKDLKTSFLTERGLVTAVDGVSFSIKPGETLGVVGESGCGKSVTAASIMRLLNKDSTIYEGEIIYKGKNLLK LSEKEMREIRGNEISIIFQDAMTSLNPVYTIGDQIAESLMIHRKLNKRQAYEEAIEMLRMTGIPAPEKRVHEYPHELSGG MRQRAMIAMALSCRPSLLIADEPTTALDVTIQAQILDLINDLKEELNMSVMMITHDLGVVAEVCTRVVVMYLGQVIEETD VESLFDQPLHPYTKGLLECIPQLEDDRSKRLFTIKGIVPSLDNVPKGCRFAQRCPYVDEQCMSESPDLKEVSQGHKVRCW NYDKISS
Sequences:
>Translated_327_residues MANSNLLEIKDLKTSFLTERGLVTAVDGVSFSIKPGETLGVVGESGCGKSVTAASIMRLLNKDSTIYEGEIIYKGKNLLK LSEKEMREIRGNEISIIFQDAMTSLNPVYTIGDQIAESLMIHRKLNKRQAYEEAIEMLRMTGIPAPEKRVHEYPHELSGG MRQRAMIAMALSCRPSLLIADEPTTALDVTIQAQILDLINDLKEELNMSVMMITHDLGVVAEVCTRVVVMYLGQVIEETD VESLFDQPLHPYTKGLLECIPQLEDDRSKRLFTIKGIVPSLDNVPKGCRFAQRCPYVDEQCMSESPDLKEVSQGHKVRCW NYDKISS >Mature_326_residues ANSNLLEIKDLKTSFLTERGLVTAVDGVSFSIKPGETLGVVGESGCGKSVTAASIMRLLNKDSTIYEGEIIYKGKNLLKL SEKEMREIRGNEISIIFQDAMTSLNPVYTIGDQIAESLMIHRKLNKRQAYEEAIEMLRMTGIPAPEKRVHEYPHELSGGM RQRAMIAMALSCRPSLLIADEPTTALDVTIQAQILDLINDLKEELNMSVMMITHDLGVVAEVCTRVVVMYLGQVIEETDV ESLFDQPLHPYTKGLLECIPQLEDDRSKRLFTIKGIVPSLDNVPKGCRFAQRCPYVDEQCMSESPDLKEVSQGHKVRCWN YDKISS
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI4505771, Length=219, Percent_Identity=30.1369863013699, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI9961252, Length=219, Percent_Identity=30.1369863013699, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI9961250, Length=219, Percent_Identity=30.1369863013699, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI9665248, Length=227, Percent_Identity=26.431718061674, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI21536376, Length=234, Percent_Identity=26.0683760683761, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI42741659, Length=228, Percent_Identity=28.5087719298246, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9955963, Length=228, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI25914749, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI21536378, Length=228, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI255708477, Length=218, Percent_Identity=27.9816513761468, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI48994883, Length=315, Percent_Identity=50.7936507936508, Blast_Score=328, Evalue=3e-91, Organism=Escherichia coli, GI1789963, Length=314, Percent_Identity=46.8152866242038, Blast_Score=315, Evalue=2e-87, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=50.9433962264151, Blast_Score=279, Evalue=2e-76, Organism=Escherichia coli, GI1787759, Length=317, Percent_Identity=43.5331230283912, Blast_Score=256, Evalue=2e-69, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=48.8372093023256, Blast_Score=245, Evalue=3e-66, Organism=Escherichia coli, GI1787500, Length=323, Percent_Identity=41.4860681114551, Blast_Score=238, Evalue=4e-64, Organism=Escherichia coli, GI1789962, Length=325, Percent_Identity=40, Blast_Score=236, Evalue=2e-63, Organism=Escherichia coli, GI1787548, Length=304, Percent_Identity=35.1973684210526, Blast_Score=202, Evalue=2e-53, Organism=Escherichia coli, GI1787758, Length=326, Percent_Identity=34.9693251533742, Blast_Score=199, Evalue=3e-52, Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=36.9230769230769, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=37.1794871794872, Blast_Score=152, Evalue=3e-38, Organism=Escherichia coli, GI1787547, Length=258, Percent_Identity=32.9457364341085, Blast_Score=135, Evalue=4e-33, Organism=Escherichia coli, GI1789891, Length=212, Percent_Identity=34.9056603773585, Blast_Score=131, Evalue=5e-32, Organism=Escherichia coli, GI1789032, Length=248, Percent_Identity=31.0483870967742, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=31.2252964426877, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1786398, Length=268, Percent_Identity=29.8507462686567, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1787029, Length=245, Percent_Identity=31.0204081632653, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=34.7619047619048, Blast_Score=111, Evalue=8e-26, Organism=Escherichia coli, GI1787712, Length=237, Percent_Identity=32.4894514767932, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1786703, Length=248, Percent_Identity=32.6612903225806, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1789672, Length=239, Percent_Identity=28.0334728033473, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI87081791, Length=252, Percent_Identity=31.3492063492063, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1790162, Length=234, Percent_Identity=29.9145299145299, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=34.051724137931, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1786872, Length=218, Percent_Identity=29.8165137614679, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=26.984126984127, Blast_Score=98, Evalue=9e-22, Organism=Escherichia coli, GI1788644, Length=265, Percent_Identity=29.4339622641509, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1786563, Length=209, Percent_Identity=33.0143540669856, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788761, Length=258, Percent_Identity=29.4573643410853, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787105, Length=291, Percent_Identity=28.1786941580756, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=26.4957264957265, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=26.7241379310345, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789873, Length=232, Percent_Identity=27.1551724137931, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1786319, Length=242, Percent_Identity=28.5123966942149, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1786803, Length=221, Percent_Identity=27.1493212669683, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786345, Length=216, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787164, Length=207, Percent_Identity=31.4009661835749, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87082267, Length=231, Percent_Identity=30.7359307359307, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1789586, Length=259, Percent_Identity=24.7104247104247, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790190, Length=314, Percent_Identity=28.0254777070064, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1790739, Length=274, Percent_Identity=24.8175182481752, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1787112, Length=240, Percent_Identity=28.3333333333333, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790467, Length=241, Percent_Identity=25.3112033195021, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=30.0448430493274, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1788053, Length=190, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1789991, Length=245, Percent_Identity=28.1632653061224, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1786698, Length=214, Percent_Identity=26.1682242990654, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787143, Length=222, Percent_Identity=30.1801801801802, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786253, Length=207, Percent_Identity=28.9855072463768, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1787792, Length=215, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48995001, Length=220, Percent_Identity=26.8181818181818, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI1789751, Length=254, Percent_Identity=25.5905511811024, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1787182, Length=226, Percent_Identity=23.4513274336283, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87081782, Length=232, Percent_Identity=28.0172413793103, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788472, Length=235, Percent_Identity=27.6595744680851, Blast_Score=61, Evalue=8e-11, Organism=Escherichia coli, GI48994943, Length=232, Percent_Identity=27.5862068965517, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI193209708, Length=236, Percent_Identity=29.2372881355932, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193202349, Length=206, Percent_Identity=30.0970873786408, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17541710, Length=230, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71984940, Length=187, Percent_Identity=32.0855614973262, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17558664, Length=241, Percent_Identity=29.4605809128631, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567265, Length=236, Percent_Identity=25.4237288135593, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25146777, Length=242, Percent_Identity=28.099173553719, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193211015, Length=237, Percent_Identity=27.0042194092827, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71996809, Length=237, Percent_Identity=27.0042194092827, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193211017, Length=237, Percent_Identity=27.0042194092827, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17569143, Length=225, Percent_Identity=28, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567243, Length=237, Percent_Identity=29.957805907173, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115534520, Length=250, Percent_Identity=27.2, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115535101, Length=223, Percent_Identity=24.6636771300448, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193208177, Length=228, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI212646699, Length=243, Percent_Identity=26.3374485596708, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17567269, Length=224, Percent_Identity=25.4464285714286, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71983510, Length=232, Percent_Identity=25.8620689655172, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71983516, Length=232, Percent_Identity=25.8620689655172, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71983523, Length=232, Percent_Identity=25.8620689655172, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=249, Percent_Identity=30.5220883534137, Blast_Score=81, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6322957, Length=250, Percent_Identity=27.2, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI24641565, Length=214, Percent_Identity=30.3738317757009, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI85726357, Length=252, Percent_Identity=25.7936507936508, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36587; Mature: 36456
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANSNLLEIKDLKTSFLTERGLVTAVDGVSFSIKPGETLGVVGESGCGKSVTAASIMRLL CCCCCEEEHHHHHHHHHHHCCCEEEECCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHH NKDSTIYEGEIIYKGKNLLKLSEKEMREIRGNEISIIFQDAMTSLNPVYTIGDQIAESLM CCCCCEEECEEEECCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHH IHRKLNKRQAYEEAIEMLRMTGIPAPEKRVHEYPHELSGGMRQRAMIAMALSCRPSLLIA HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCEEEE DEPTTALDVTIQAQILDLINDLKEELNMSVMMITHDLGVVAEVCTRVVVMYLGQVIEETD CCCCCEEEEEHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC VESLFDQPLHPYTKGLLECIPQLEDDRSKRLFTIKGIVPSLDNVPKGCRFAQRCPYVDEQ HHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCHH CMSESPDLKEVSQGHKVRCWNYDKISS HCCCCCCHHHHHCCCCEEEECCCCCCC >Mature Secondary Structure ANSNLLEIKDLKTSFLTERGLVTAVDGVSFSIKPGETLGVVGESGCGKSVTAASIMRLL CCCCEEEHHHHHHHHHHHCCCEEEECCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHH NKDSTIYEGEIIYKGKNLLKLSEKEMREIRGNEISIIFQDAMTSLNPVYTIGDQIAESLM CCCCCEEECEEEECCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHH IHRKLNKRQAYEEAIEMLRMTGIPAPEKRVHEYPHELSGGMRQRAMIAMALSCRPSLLIA HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCEEEE DEPTTALDVTIQAQILDLINDLKEELNMSVMMITHDLGVVAEVCTRVVVMYLGQVIEETD CCCCCEEEEEHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC VESLFDQPLHPYTKGLLECIPQLEDDRSKRLFTIKGIVPSLDNVPKGCRFAQRCPYVDEQ HHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCHH CMSESPDLKEVSQGHKVRCWNYDKISS HCCCCCCHHHHHCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]