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The map label for this gene is dsdA [H]

Identifier: 138895485

GI number: 138895485

Start: 1952455

End: 1953819

Strand: Reverse

Name: dsdA [H]

Synonym: GTNG_1833

Alternate gene names: 138895485

Gene position: 1953819-1952455 (Counterclockwise)

Preceding gene: 138895487

Following gene: 138895484

Centisome position: 55.03

GC content: 49.45

Gene sequence:

>1365_bases
ATGGAGAACGGGATTGTGGCAGGCAAAACGATCGAGAAATGGGTAAAGGAACTTCCGTTGCTGGAACAGATGATGCAGAC
GGAAGAAGTGTTTTGGACAAATCCAAACTATCATTCATTTGATCAAGCTGCTCGACATCTTTCGCTCGGTGAACGCGATG
TTAAGGAGGCCGAAGAGCGGTTAGCGCGCTTTGCCCCGTATATCGCTAAAGTGTTTCCGGAAACGCAAAGCACGGGTGGA
ATTATTGAATCGCCGTTAGTGAAAATTCCAAAGATGCAACGATATTTGGAAGAGACGTTTCGGCAACCAATCGAAGGAGA
AGTATGGCTCAAATGCGACAGCCATCTTCCTATTTCCGGATCGATCAAGGCGAGAGGGGGGATTTATGAAGTTTTGAAAC
ATGCCGAAGACCTCGCGCTCGCAAACGGCATGATTTCTGTAGAAGATGACTATACGCTCCTAGCTAATGAGGAGTTTCGA
CAGTTCTTTTCCCGCTATTCGCTTGTTGTCGGCTCGACGGGAAATTTAGGCCTTAGCATCGGGATCATCGGAGCACGGCT
TGGATTTCATGTGACGGTTCATATGTCGTCGGATGCCAAACAATGGAAGAAGGAGTTGTTGCGAAGCAAAGGGGTGACGG
TGGTCGAACATCTCACCGATTATAACAAAGTGGTAGAAGAGGCGAGAAGACAATCGGCTGAGGACCCAACATCGTATTTT
ATCGATGATGAGAATTCAACTCAGTTGTTTTTAGGATACGCAGTGGCAGCGTTGAGGTTGAAACAACAATTAGAGGATAT
GAACATCATCGTCGATGAAGAACATCCGCTGTTTGTGTACCTTCCTTGTGGAGTGGGCGGCGGACCGGGTGGGGTGACGT
TTGGCTTAAAACTTGTGTATGGAGATCATGTGCATTGCTTTTTCGCCGAACCGACCCACTCGCCTTGCATGCTGCTTGGG
CTGATGACAGGAGAACACGATCGCGTATCGGTGCAGGATTTTGGTATTGATAACAAGACGGAAGCCGACGGACTAGCGGT
CGGCCGGCCGTCGGGATTTGTCGGAAAGATGTTGGAAAACGCTATCAGCGGCGTATATACAGTGGACGATTCCACTCTTT
ATCAGCTGCTTGCGGCGATGATTGATACGGAGAAGATCCGATTAGAGCCGTCGGCATTGGCAGGGGTCGCAGGGCCTGTT
CGTTTGTGTCAAGACCAAGCGGCGCACATGTATCTCGAGCAGCACCATTTGAAAGAAAAAATGAACCAAGCCACCCATAT
TTGCTGGGCCACGGGTGGAAGTATGGTGCCTAAGGACGTGATGGACGCCTACTATAAGGAAGGGAAACGCCGGCAAAGAG
GGTGA

Upstream 100 bases:

>100_bases
TGTTCAAGGTGAGTTCCCCCCCTCTATACCAGTGATCATTGTTTTCTATTATACTAGAAATAGATGTTTTTTACATCGCA
TATGGACAAGGAGGAGCCAG

Downstream 100 bases:

>100_bases
TGCCATCCTAACAAGGCAAGACAGGTTAGGTTTCGCACAGGAAATACGTTTGCAGATGGAGGTTATCTGATGAGCACAGA
AAAAGAAAATATGTTGGCTG

Product: D-serine dehydratase

Products: NA

Alternate protein names: D-serine deaminase; DSD [H]

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MENGIVAGKTIEKWVKELPLLEQMMQTEEVFWTNPNYHSFDQAARHLSLGERDVKEAEERLARFAPYIAKVFPETQSTGG
IIESPLVKIPKMQRYLEETFRQPIEGEVWLKCDSHLPISGSIKARGGIYEVLKHAEDLALANGMISVEDDYTLLANEEFR
QFFSRYSLVVGSTGNLGLSIGIIGARLGFHVTVHMSSDAKQWKKELLRSKGVTVVEHLTDYNKVVEEARRQSAEDPTSYF
IDDENSTQLFLGYAVAALRLKQQLEDMNIIVDEEHPLFVYLPCGVGGGPGGVTFGLKLVYGDHVHCFFAEPTHSPCMLLG
LMTGEHDRVSVQDFGIDNKTEADGLAVGRPSGFVGKMLENAISGVYTVDDSTLYQLLAAMIDTEKIRLEPSALAGVAGPV
RLCQDQAAHMYLEQHHLKEKMNQATHICWATGGSMVPKDVMDAYYKEGKRRQRG

Sequences:

>Translated_454_residues
MENGIVAGKTIEKWVKELPLLEQMMQTEEVFWTNPNYHSFDQAARHLSLGERDVKEAEERLARFAPYIAKVFPETQSTGG
IIESPLVKIPKMQRYLEETFRQPIEGEVWLKCDSHLPISGSIKARGGIYEVLKHAEDLALANGMISVEDDYTLLANEEFR
QFFSRYSLVVGSTGNLGLSIGIIGARLGFHVTVHMSSDAKQWKKELLRSKGVTVVEHLTDYNKVVEEARRQSAEDPTSYF
IDDENSTQLFLGYAVAALRLKQQLEDMNIIVDEEHPLFVYLPCGVGGGPGGVTFGLKLVYGDHVHCFFAEPTHSPCMLLG
LMTGEHDRVSVQDFGIDNKTEADGLAVGRPSGFVGKMLENAISGVYTVDDSTLYQLLAAMIDTEKIRLEPSALAGVAGPV
RLCQDQAAHMYLEQHHLKEKMNQATHICWATGGSMVPKDVMDAYYKEGKRRQRG
>Mature_454_residues
MENGIVAGKTIEKWVKELPLLEQMMQTEEVFWTNPNYHSFDQAARHLSLGERDVKEAEERLARFAPYIAKVFPETQSTGG
IIESPLVKIPKMQRYLEETFRQPIEGEVWLKCDSHLPISGSIKARGGIYEVLKHAEDLALANGMISVEDDYTLLANEEFR
QFFSRYSLVVGSTGNLGLSIGIIGARLGFHVTVHMSSDAKQWKKELLRSKGVTVVEHLTDYNKVVEEARRQSAEDPTSYF
IDDENSTQLFLGYAVAALRLKQQLEDMNIIVDEEHPLFVYLPCGVGGGPGGVTFGLKLVYGDHVHCFFAEPTHSPCMLLG
LMTGEHDRVSVQDFGIDNKTEADGLAVGRPSGFVGKMLENAISGVYTVDDSTLYQLLAAMIDTEKIRLEPSALAGVAGPV
RLCQDQAAHMYLEQHHLKEKMNQATHICWATGGSMVPKDVMDAYYKEGKRRQRG

Specific function: Unknown

COG id: COG3048

COG function: function code E; D-serine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the serine/threonine dehydratase family. DsdA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788708, Length=450, Percent_Identity=58.4444444444444, Blast_Score=523, Evalue=1e-150,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011780
- InterPro:   IPR001926
- InterPro:   IPR000634 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.3.1.18 [H]

Molecular weight: Translated: 50644; Mature: 50644

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00165 DEHYDRATASE_SER_THR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENGIVAGKTIEKWVKELPLLEQMMQTEEVFWTNPNYHSFDQAARHLSLGERDVKEAEER
CCCCEECCHHHHHHHHHCHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCHHHHHHHHHH
LARFAPYIAKVFPETQSTGGIIESPLVKIPKMQRYLEETFRQPIEGEVWLKCDSHLPISG
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
SIKARGGIYEVLKHAEDLALANGMISVEDDYTLLANEEFRQFFSRYSLVVGSTGNLGLSI
CCCCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEECHHHHHHHHHHEEEEECCCCCEEEE
GIIGARLGFHVTVHMSSDAKQWKKELLRSKGVTVVEHLTDYNKVVEEARRQSAEDPTSYF
EEEEECCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE
IDDENSTQLFLGYAVAALRLKQQLEDMNIIVDEEHPLFVYLPCGVGGGPGGVTFGLKLVY
EECCCCCEEHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCCCCEEEEEEEE
GDHVHCFFAEPTHSPCMLLGLMTGEHDRVSVQDFGIDNKTEADGLAVGRPSGFVGKMLEN
CCEEEEEEECCCCCCEEEEEEECCCCCEEEHHCCCCCCCCCCCCEEECCCCCHHHHHHHH
AISGVYTVDDSTLYQLLAAMIDTEKIRLEPSALAGVAGPVRLCQDQAAHMYLEQHHLKEK
HHCCEEECCCHHHHHHHHHHHCCHHEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
MNQATHICWATGGSMVPKDVMDAYYKEGKRRQRG
HHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MENGIVAGKTIEKWVKELPLLEQMMQTEEVFWTNPNYHSFDQAARHLSLGERDVKEAEER
CCCCEECCHHHHHHHHHCHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCHHHHHHHHHH
LARFAPYIAKVFPETQSTGGIIESPLVKIPKMQRYLEETFRQPIEGEVWLKCDSHLPISG
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
SIKARGGIYEVLKHAEDLALANGMISVEDDYTLLANEEFRQFFSRYSLVVGSTGNLGLSI
CCCCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEECHHHHHHHHHHEEEEECCCCCEEEE
GIIGARLGFHVTVHMSSDAKQWKKELLRSKGVTVVEHLTDYNKVVEEARRQSAEDPTSYF
EEEEECCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE
IDDENSTQLFLGYAVAALRLKQQLEDMNIIVDEEHPLFVYLPCGVGGGPGGVTFGLKLVY
EECCCCCEEHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCCCCEEEEEEEE
GDHVHCFFAEPTHSPCMLLGLMTGEHDRVSVQDFGIDNKTEADGLAVGRPSGFVGKMLEN
CCEEEEEEECCCCCCEEEEEEECCCCCEEEHHCCCCCCCCCCCCEEECCCCCHHHHHHHH
AISGVYTVDDSTLYQLLAAMIDTEKIRLEPSALAGVAGPVRLCQDQAAHMYLEQHHLKEK
HHCCEEECCCHHHHHHHHHHHCCHHEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
MNQATHICWATGGSMVPKDVMDAYYKEGKRRQRG
HHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA