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The map label for this gene is yciR [C]

Identifier: 138895220

GI number: 138895220

Start: 1643127

End: 1644440

Strand: Direct

Name: yciR [C]

Synonym: GTNG_1560

Alternate gene names: 138895220

Gene position: 1643127-1644440 (Clockwise)

Preceding gene: 138895219

Following gene: 138895221

Centisome position: 46.28

GC content: 45.89

Gene sequence:

>1314_bases
ATGGAGGATTTGGAACAAGTGGAGACAACATTGATCGAGCAGCACTACGGGCTGTTATGGAGCATTTTTGATATGATCGA
CGACATGGTCTTTATTGTGCGGGCTGATGAACGAGGATTTCATTATGTATGGGCGAATCAAAAAGCGTGTCGTACCGTTG
GAACGAATCATCTCGCTGGTAAGCGGTTCGAAGACGTTTTGCCTCCAACGCAGGCGGTAAAACTCGAAGCGCACTATAAA
CAGGCTGCACAAATGAAGACGACGTTCGTTTATGAGGATGAGATCGACACTCCTTTCGGACGAAAAAGTTACGAAACCGT
CCTTACCCCGTTTGTTTTGCCAAACGACGCACATCTCTGGTTCGTTGCCGTTGTCCGCGACATAACGGAACGAAAGGTTC
GGGAATGGGAGCTGCAAAAGCTCAAAGAGCGACTGGAAGCGAGCGAAGAACGGTACAGAACGTTTCTGGAGCATTTGCCC
GGGGCGGTGCTTGTTTTTGACCAAGATGGAATCATTATTTATGCGAACACGGGAGCTGTACAGCTGTTCGGGGCGAAACA
AAAAAGTGAAATCGTAGGTGTCCCTATACGGAACATTTGCTGTGGGGTGGATGACACCGTATGGGAAACCTGCTGGAAGG
ATGAACTTTCTTTTATCGAAAAAGTCCATACGTTGGATGACAGAACGATTTATGCAAGGATGGCGTTCTCCCCCATCGAA
TATGGTGACAAGACGGCTGTCCAAGTCGTCATGCTTGACGTAACCGAACGAGTCCATTATGAAGAACAACTAAAATATTT
AGCGTTCCATGACGCATTAACCGGTTTTCCAAACCGGAGATTGTTTCTTGATGTGGTCCGTGAATCGATTGAGGAAGCCA
AACAAACCAATGACCAGTTAGCCATTGTGTATATCGACATGGATCATTTTAAGGAAGTGAACGATACGTTCGGCCATGAT
ATGGGAGATCAGCTTTTAAAGCGGTTTGCCCAAAGGGTAAAGGAGAATATTGAACCGAATGCCATCCCGTGTAGAATGGG
AGGAGATGAATTTTTACTTTTGCTAAGGGGCGTAATGAATGATTTGGATATCGAGAAAAAAGTGTACAAACTGCACCAAA
GCATGCAAAAGCCGTTTTTCATTAACGGTCATAAAATAGTTGTCACCACCAGCATCGGAATTGCTATTTATCCGTGGCAT
GGAAGCACAGCAAAAGAACTAATCCTCCATGCTGACCAAGCCCTCTATCGGGCAAAAGCCAAACGCAATCACTACCAATT
CTACAGCCAAGAGGCCAAACAGGCGGCCAAATAA

Upstream 100 bases:

>100_bases
GGTACAACGGAGAATGGTGACGATTCATCTTTAGCTAAGCGTTTCAAGTGATGGGGAAGGAAGCGCTGAACGGTATTCGC
ATCCTTTTGAAACCTTTCTT

Downstream 100 bases:

>100_bases
ATTTGGAAGATGTGAAAAACATGCCCCTTTATTTTGAAAGAAGTTCCCCTATTTTCTAAACGACGTGAAAGCAGAACATA
AAAATGGTAACCGGGTCGCT

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MEDLEQVETTLIEQHYGLLWSIFDMIDDMVFIVRADERGFHYVWANQKACRTVGTNHLAGKRFEDVLPPTQAVKLEAHYK
QAAQMKTTFVYEDEIDTPFGRKSYETVLTPFVLPNDAHLWFVAVVRDITERKVREWELQKLKERLEASEERYRTFLEHLP
GAVLVFDQDGIIIYANTGAVQLFGAKQKSEIVGVPIRNICCGVDDTVWETCWKDELSFIEKVHTLDDRTIYARMAFSPIE
YGDKTAVQVVMLDVTERVHYEEQLKYLAFHDALTGFPNRRLFLDVVRESIEEAKQTNDQLAIVYIDMDHFKEVNDTFGHD
MGDQLLKRFAQRVKENIEPNAIPCRMGGDEFLLLLRGVMNDLDIEKKVYKLHQSMQKPFFINGHKIVVTTSIGIAIYPWH
GSTAKELILHADQALYRAKAKRNHYQFYSQEAKQAAK

Sequences:

>Translated_437_residues
MEDLEQVETTLIEQHYGLLWSIFDMIDDMVFIVRADERGFHYVWANQKACRTVGTNHLAGKRFEDVLPPTQAVKLEAHYK
QAAQMKTTFVYEDEIDTPFGRKSYETVLTPFVLPNDAHLWFVAVVRDITERKVREWELQKLKERLEASEERYRTFLEHLP
GAVLVFDQDGIIIYANTGAVQLFGAKQKSEIVGVPIRNICCGVDDTVWETCWKDELSFIEKVHTLDDRTIYARMAFSPIE
YGDKTAVQVVMLDVTERVHYEEQLKYLAFHDALTGFPNRRLFLDVVRESIEEAKQTNDQLAIVYIDMDHFKEVNDTFGHD
MGDQLLKRFAQRVKENIEPNAIPCRMGGDEFLLLLRGVMNDLDIEKKVYKLHQSMQKPFFINGHKIVVTTSIGIAIYPWH
GSTAKELILHADQALYRAKAKRNHYQFYSQEAKQAAK
>Mature_437_residues
MEDLEQVETTLIEQHYGLLWSIFDMIDDMVFIVRADERGFHYVWANQKACRTVGTNHLAGKRFEDVLPPTQAVKLEAHYK
QAAQMKTTFVYEDEIDTPFGRKSYETVLTPFVLPNDAHLWFVAVVRDITERKVREWELQKLKERLEASEERYRTFLEHLP
GAVLVFDQDGIIIYANTGAVQLFGAKQKSEIVGVPIRNICCGVDDTVWETCWKDELSFIEKVHTLDDRTIYARMAFSPIE
YGDKTAVQVVMLDVTERVHYEEQLKYLAFHDALTGFPNRRLFLDVVRESIEEAKQTNDQLAIVYIDMDHFKEVNDTFGHD
MGDQLLKRFAQRVKENIEPNAIPCRMGGDEFLLLLRGVMNDLDIEKKVYKLHQSMQKPFFINGHKIVVTTSIGIAIYPWH
GSTAKELILHADQALYRAKAKRNHYQFYSQEAKQAAK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=183, Percent_Identity=35.5191256830601, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788381, Length=323, Percent_Identity=29.4117647058824, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87081881, Length=266, Percent_Identity=28.9473684210526, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI145693134, Length=188, Percent_Identity=31.3829787234043, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=36.1963190184049, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=28.3236994219653, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=31.2883435582822, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=28.3132530120482, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081974, Length=85, Percent_Identity=35.2941176470588, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787802, Length=208, Percent_Identity=27.8846153846154, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081921, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 50721; Mature: 50721

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDLEQVETTLIEQHYGLLWSIFDMIDDMVFIVRADERGFHYVWANQKACRTVGTNHLAG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCHHHHHCCCCCCCC
KRFEDVLPPTQAVKLEAHYKQAAQMKTTFVYEDEIDTPFGRKSYETVLTPFVLPNDAHLW
CHHHHHCCCCHHEEHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHCCEECCCCCCHH
FVAVVRDITERKVREWELQKLKERLEASEERYRTFLEHLPGAVLVFDQDGIIIYANTGAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCEE
QLFGAKQKSEIVGVPIRNICCGVDDTVWETCWKDELSFIEKVHTLDDRTIYARMAFSPIE
EEECCCCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
YGDKTAVQVVMLDVTERVHYEEQLKYLAFHDALTGFPNRRLFLDVVRESIEEAKQTNDQL
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCE
AIVYIDMDHFKEVNDTFGHDMGDQLLKRFAQRVKENIEPNAIPCRMGGDEFLLLLRGVMN
EEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHH
DLDIEKKVYKLHQSMQKPFFINGHKIVVTTSIGIAIYPWHGSTAKELILHADQALYRAKA
HCCHHHHHHHHHHHHCCCEEECCCEEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHH
KRNHYQFYSQEAKQAAK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEDLEQVETTLIEQHYGLLWSIFDMIDDMVFIVRADERGFHYVWANQKACRTVGTNHLAG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCHHHHHCCCCCCCC
KRFEDVLPPTQAVKLEAHYKQAAQMKTTFVYEDEIDTPFGRKSYETVLTPFVLPNDAHLW
CHHHHHCCCCHHEEHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHCCEECCCCCCHH
FVAVVRDITERKVREWELQKLKERLEASEERYRTFLEHLPGAVLVFDQDGIIIYANTGAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCEE
QLFGAKQKSEIVGVPIRNICCGVDDTVWETCWKDELSFIEKVHTLDDRTIYARMAFSPIE
EEECCCCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
YGDKTAVQVVMLDVTERVHYEEQLKYLAFHDALTGFPNRRLFLDVVRESIEEAKQTNDQL
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCE
AIVYIDMDHFKEVNDTFGHDMGDQLLKRFAQRVKENIEPNAIPCRMGGDEFLLLLRGVMN
EEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHH
DLDIEKKVYKLHQSMQKPFFINGHKIVVTTSIGIAIYPWHGSTAKELILHADQALYRAKA
HCCHHHHHHHHHHHHCCCEEECCCEEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHH
KRNHYQFYSQEAKQAAK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]