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The map label for this gene is kstR2 [H]

Identifier: 138895170

GI number: 138895170

Start: 1592053

End: 1592634

Strand: Direct

Name: kstR2 [H]

Synonym: GTNG_1508

Alternate gene names: 138895170

Gene position: 1592053-1592634 (Clockwise)

Preceding gene: 138895169

Following gene: 138895171

Centisome position: 44.84

GC content: 48.97

Gene sequence:

>582_bases
ATGAAAGAAAAACTGATGGAAGCCAGCATAGAGCTATTTGACCGCAAAGGGTTCAAAGAAACGTCTGTACAGGAAATCGT
CGAAGCGGTCGGGGCAACAAAAGGGGCGTTCTATTACTATTACAGAAGCAAAGAAGAACTGTTGCGCGATATATGCATCT
CCTATATCGAAGATTTGCTTGACCAGCAGAGTCGCCTGCTGCAGGAACCCGAGAAGAGCTGTACAGAAAAACTGCATGCG
ATCGTCTATATGGTGATTCGCAACATTCGCACACGGAAGAAAAGCGCCCGCATTTTCTTTCGTGAGATGCGGCATTTGGC
TGATGAACATTTGAAGGAAATCCGCGAGAAGCGGCGGGCGTTCCGCAAGCAGTATGAACAGCTCATCCAGGAAGGGGTCG
CCCGCGGCGAATTTAAGCCGTCGCTTCATGCAGAAATGATCACGTTCGGCCTGCTTGGCATCACGAATTGGAGCTACTAC
TGGTTTCAACCGGACGGAAGCGTTTCCGAAGAGGAGTTAACCGACATTTATGTCGACTTAATTTTAAACGGCATTCGAGG
GCAGGAACGGCCAAAACGATAG

Upstream 100 bases:

>100_bases
CGTCGCGGTGGGACATACGCCCTCATTACGGCGTGCATCGGCGGCGGCCAAGGGATCGCGACGATCATTGAACGAGCCTG
AACACATGGAGACAATGGAT

Downstream 100 bases:

>100_bases
GTTCTATCGAACTGTTCAAGTTGTTCACCTGTTTTCGGTGCAAGAGATAAGGGGGGGATCGGGGTGGAATTGTTTATCCA
GCAGCTCATAAACGGGCTGA

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MKEKLMEASIELFDRKGFKETSVQEIVEAVGATKGAFYYYYRSKEELLRDICISYIEDLLDQQSRLLQEPEKSCTEKLHA
IVYMVIRNIRTRKKSARIFFREMRHLADEHLKEIREKRRAFRKQYEQLIQEGVARGEFKPSLHAEMITFGLLGITNWSYY
WFQPDGSVSEEELTDIYVDLILNGIRGQERPKR

Sequences:

>Translated_193_residues
MKEKLMEASIELFDRKGFKETSVQEIVEAVGATKGAFYYYYRSKEELLRDICISYIEDLLDQQSRLLQEPEKSCTEKLHA
IVYMVIRNIRTRKKSARIFFREMRHLADEHLKEIREKRRAFRKQYEQLIQEGVARGEFKPSLHAEMITFGLLGITNWSYY
WFQPDGSVSEEELTDIYVDLILNGIRGQERPKR
>Mature_193_residues
MKEKLMEASIELFDRKGFKETSVQEIVEAVGATKGAFYYYYRSKEELLRDICISYIEDLLDQQSRLLQEPEKSCTEKLHA
IVYMVIRNIRTRKKSARIFFREMRHLADEHLKEIREKRRAFRKQYEQLIQEGVARGEFKPSLHAEMITFGLLGITNWSYY
WFQPDGSVSEEELTDIYVDLILNGIRGQERPKR

Specific function: Controls the expression of a small regulon that may play a role in the utilization of cholesterol [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22983; Mature: 22983

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKLMEASIELFDRKGFKETSVQEIVEAVGATKGAFYYYYRSKEELLRDICISYIEDLL
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHEEECCHHHHHHHHHHHHHHHHH
DQQSRLLQEPEKSCTEKLHAIVYMVIRNIRTRKKSARIFFREMRHLADEHLKEIREKRRA
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRKQYEQLIQEGVARGEFKPSLHAEMITFGLLGITNWSYYWFQPDGSVSEEELTDIYVDL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
ILNGIRGQERPKR
HHHHHCCCCCCCC
>Mature Secondary Structure
MKEKLMEASIELFDRKGFKETSVQEIVEAVGATKGAFYYYYRSKEELLRDICISYIEDLL
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHEEECCHHHHHHHHHHHHHHHHH
DQQSRLLQEPEKSCTEKLHAIVYMVIRNIRTRKKSARIFFREMRHLADEHLKEIREKRRA
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRKQYEQLIQEGVARGEFKPSLHAEMITFGLLGITNWSYYWFQPDGSVSEEELTDIYVDL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
ILNGIRGQERPKR
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA