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The map label for this gene is ymfH [H]

Identifier: 138894808

GI number: 138894808

Start: 1207550

End: 1208839

Strand: Direct

Name: ymfH [H]

Synonym: GTNG_1142

Alternate gene names: 138894808

Gene position: 1207550-1208839 (Clockwise)

Preceding gene: 138894807

Following gene: 138894809

Centisome position: 34.01

GC content: 48.76

Gene sequence:

>1290_bases
ATGGAAAAGCGGGTGTATGAAACGCTGCAAGAAACGTTGTTTTATGAAAAAATGGACAACGGTCTTGATGTCTACATTTT
ACCGAAAAAAGGGTTTCACAAAACGTATGCGACGTTTACGACGAACTACGGTTCTGTCGACAACCAGTTCGTCCCGCTCG
GAAAAACGGAAATGAAACGCGTCCCGGACGGCATCGCTCATTTTTTGGAGCATAAGCTGTTTGAAAAAGAGGACGGCGAC
GTGTTTCAGCAGTTTAGCAAACAAGGCGCTTCGGCGAACGCTTTTACGACGTTCACCCGTACTGCCTACTTGTTCTCAAG
CACCGACAACGTGGAGAAAAACTTGGAGACGTTAATGGATTTTGTACAAACGCCGTATTTTTCCGACAAGACCGTCGAAA
AAGAAAAAGGCATCATCGGCCAGGAAATTCGCATGTACGATGACAACCCGGACTGGCGCGTTTACTTCGGTGCCATCGAA
AGCATGTACCATCACCATCCGGTCAAAATCGACATCGCCGGCACAATCGAATCGATTGCTGAGATTACAAAAGAGTTGCT
GTATGAATGTTACGAAACATTTTATCACCCGAGCAACATGCTGTTGTTTGTTGTCGGTCCGGTCGATGAGCAACAAATTA
TGCAGCAAATCCGAGACAATCAGGCGAAAAAGTCATTCCCGCAAGCGCCTGAGGTGAAACGGTTCACGTACGAAGAGCCA
AGCGGTGTGGCGGAAAAGAAAAAAGTCATTCCGATGCATGTGCAGACGAATAAATGTTTTGTCGGTATTAAAGCGCCGTC
CGTGCCGAATATCGGCGAACAGAAACTCCGCCATGAGCTCGCGTTTCACGTGCTGCTTGACTACTTGTTCGGCAAAAGCT
CGCCGCATTACGAACGGTTGTATCGCGAAGGATTGATTGACGATACGTTTATGTACGACTATACGGAAGAGCGCGAATTT
GGCTTTGCCCTTGTCGGCGGCGACACGAGAGATGCGGAGCGGCTGGCGGCAGAGGTGCAGAAGGTGCTGCAGTCGTTTTC
AGCTGACGCGGTACAAAAAGACGAGATCGAACGAGTGAAAAAGAAAAAAATGGGTGCCTTTTTGCGCGCGCTCAACTCGC
CGGAATACATCGCCAACCAGTTTACACGCTATGCTTTTTATGGCGCTAGCTTGTTTGATATTTTGCCGGCGCTCTCGTCG
CTTACGCTTGATGATATTGCCGCTGTCGCCGACTCGTGTTTCCGCGACTCGCAAATCGCTGTTTGTGAAGTTGTGCCAAA
AGGGCAATGA

Upstream 100 bases:

>100_bases
GGCACGGATGGTGTGACGCGCGAGGATGTCGTGCGCGTCGCCGAAAAGGTGGCGCTCGATACGGTGTACTTTTTGACCGG
AATGGAGGGGGCGACGGAAA

Downstream 100 bases:

>100_bases
TGGCATCCTTCATGAGAAGGATGCTTTTTTACGGCAAAAGGAAGGGGAGAATGTTTGATGAACTACGCGTTAATCACCGG
CGCTTCAGGCGGCATCGGGC

Product: Zinc protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MEKRVYETLQETLFYEKMDNGLDVYILPKKGFHKTYATFTTNYGSVDNQFVPLGKTEMKRVPDGIAHFLEHKLFEKEDGD
VFQQFSKQGASANAFTTFTRTAYLFSSTDNVEKNLETLMDFVQTPYFSDKTVEKEKGIIGQEIRMYDDNPDWRVYFGAIE
SMYHHHPVKIDIAGTIESIAEITKELLYECYETFYHPSNMLLFVVGPVDEQQIMQQIRDNQAKKSFPQAPEVKRFTYEEP
SGVAEKKKVIPMHVQTNKCFVGIKAPSVPNIGEQKLRHELAFHVLLDYLFGKSSPHYERLYREGLIDDTFMYDYTEEREF
GFALVGGDTRDAERLAAEVQKVLQSFSADAVQKDEIERVKKKKMGAFLRALNSPEYIANQFTRYAFYGASLFDILPALSS
LTLDDIAAVADSCFRDSQIAVCEVVPKGQ

Sequences:

>Translated_429_residues
MEKRVYETLQETLFYEKMDNGLDVYILPKKGFHKTYATFTTNYGSVDNQFVPLGKTEMKRVPDGIAHFLEHKLFEKEDGD
VFQQFSKQGASANAFTTFTRTAYLFSSTDNVEKNLETLMDFVQTPYFSDKTVEKEKGIIGQEIRMYDDNPDWRVYFGAIE
SMYHHHPVKIDIAGTIESIAEITKELLYECYETFYHPSNMLLFVVGPVDEQQIMQQIRDNQAKKSFPQAPEVKRFTYEEP
SGVAEKKKVIPMHVQTNKCFVGIKAPSVPNIGEQKLRHELAFHVLLDYLFGKSSPHYERLYREGLIDDTFMYDYTEEREF
GFALVGGDTRDAERLAAEVQKVLQSFSADAVQKDEIERVKKKKMGAFLRALNSPEYIANQFTRYAFYGASLFDILPALSS
LTLDDIAAVADSCFRDSQIAVCEVVPKGQ
>Mature_429_residues
MEKRVYETLQETLFYEKMDNGLDVYILPKKGFHKTYATFTTNYGSVDNQFVPLGKTEMKRVPDGIAHFLEHKLFEKEDGD
VFQQFSKQGASANAFTTFTRTAYLFSSTDNVEKNLETLMDFVQTPYFSDKTVEKEKGIIGQEIRMYDDNPDWRVYFGAIE
SMYHHHPVKIDIAGTIESIAEITKELLYECYETFYHPSNMLLFVVGPVDEQQIMQQIRDNQAKKSFPQAPEVKRFTYEEP
SGVAEKKKVIPMHVQTNKCFVGIKAPSVPNIGEQKLRHELAFHVLLDYLFGKSSPHYERLYREGLIDDTFMYDYTEEREF
GFALVGGDTRDAERLAAEVQKVLQSFSADAVQKDEIERVKKKKMGAFLRALNSPEYIANQFTRYAFYGASLFDILPALSS
LTLDDIAAVADSCFRDSQIAVCEVVPKGQ

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1787770, Length=243, Percent_Identity=25.5144032921811, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 49240; Mature: 49240

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRVYETLQETLFYEKMDNGLDVYILPKKGFHKTYATFTTNYGSVDNQFVPLGKTEMKR
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHEEECCCCCCCCCEECCCHHHHHH
VPDGIAHFLEHKLFEKEDGDVFQQFSKQGASANAFTTFTRTAYLFSSTDNVEKNLETLMD
CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHEEEEECCCHHHHHHHHHHH
FVQTPYFSDKTVEKEKGIIGQEIRMYDDNPDWRVYFGAIESMYHHHPVKIDIAGTIESIA
HHHCCCCCCCCCHHHCCCCCCEEEEECCCCCCEEEHHHHHHHHCCCCEEEEECHHHHHHH
EITKELLYECYETFYHPSNMLLFVVGPVDEQQIMQQIRDNQAKKSFPQAPEVKRFTYEEP
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SGVAEKKKVIPMHVQTNKCFVGIKAPSVPNIGEQKLRHELAFHVLLDYLFGKSSPHYERL
CCCHHHCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
YREGLIDDTFMYDYTEEREFGFALVGGDTRDAERLAAEVQKVLQSFSADAVQKDEIERVK
HHHCCCCCCCEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KKKMGAFLRALNSPEYIANQFTRYAFYGASLFDILPALSSLTLDDIAAVADSCFRDSQIA
HHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEE
VCEVVPKGQ
EEEECCCCC
>Mature Secondary Structure
MEKRVYETLQETLFYEKMDNGLDVYILPKKGFHKTYATFTTNYGSVDNQFVPLGKTEMKR
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHEEECCCCCCCCCEECCCHHHHHH
VPDGIAHFLEHKLFEKEDGDVFQQFSKQGASANAFTTFTRTAYLFSSTDNVEKNLETLMD
CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHEEEEECCCHHHHHHHHHHH
FVQTPYFSDKTVEKEKGIIGQEIRMYDDNPDWRVYFGAIESMYHHHPVKIDIAGTIESIA
HHHCCCCCCCCCHHHCCCCCCEEEEECCCCCCEEEHHHHHHHHCCCCEEEEECHHHHHHH
EITKELLYECYETFYHPSNMLLFVVGPVDEQQIMQQIRDNQAKKSFPQAPEVKRFTYEEP
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SGVAEKKKVIPMHVQTNKCFVGIKAPSVPNIGEQKLRHELAFHVLLDYLFGKSSPHYERL
CCCHHHCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
YREGLIDDTFMYDYTEEREFGFALVGGDTRDAERLAAEVQKVLQSFSADAVQKDEIERVK
HHHCCCCCCCEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KKKMGAFLRALNSPEYIANQFTRYAFYGASLFDILPALSSLTLDDIAAVADSCFRDSQIA
HHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEE
VCEVVPKGQ
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]