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The map label for this gene is ytcD [H]

Identifier: 138894448

GI number: 138894448

Start: 850859

End: 851230

Strand: Reverse

Name: ytcD [H]

Synonym: GTNG_0776

Alternate gene names: 138894448

Gene position: 851230-850859 (Counterclockwise)

Preceding gene: 138894461

Following gene: 138894447

Centisome position: 23.98

GC content: 36.02

Gene sequence:

>372_bases
ATGCAAAAAAAGAAGTACAATATTCCCGTTGAAGCAACATTAGAAGTGATAGGCGGAAAATGGAAATGCGTAATCCTTTG
CCATCTAACACACGGTAAAAAACGGACAAGTGAGCTAAAACGTCTTATGCCCGGCATTACACAAAAAATGTTAACTCAAC
AACTACGCGAGTTAGAAGCAGATGGGATCATTAATCGCATTGTTTATAACCAGGTTCCTCCAAAAGTGGAATATGAACTT
AGCGAATATGGATGGAGTTTAAAAGAGATTTTAGACTCTTTATGTGCATGGGGAGAAAAACATATTACCAAGGTATACGG
TGATAAATTTACTGTGTTAGAGGAGAGCGTTTTAAATGATAATCTAAAATAA

Upstream 100 bases:

>100_bases
TACATATAAATTACTCAGGAAAGTACGTACTTTTAAGTAATATAGACACTTAAAAGTACTATAGATACTTTTTAGTACCT
ATCGATTAGGAGGAAGAAAA

Downstream 100 bases:

>100_bases
CACACATTGAATAGATGGGAGCAGAATGAATAAGTGAAAAAATGCAAATACAGAAGAATGACTCAAGGCTCACGTTTAGA
AAAAACGTGAGCCTTGAATT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MQKKKYNIPVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPGITQKMLTQQLRELEADGIINRIVYNQVPPKVEYEL
SEYGWSLKEILDSLCAWGEKHITKVYGDKFTVLEESVLNDNLK

Sequences:

>Translated_123_residues
MQKKKYNIPVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPGITQKMLTQQLRELEADGIINRIVYNQVPPKVEYEL
SEYGWSLKEILDSLCAWGEKHITKVYGDKFTVLEESVLNDNLK
>Mature_123_residues
MQKKKYNIPVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPGITQKMLTQQLRELEADGIINRIVYNQVPPKVEYEL
SEYGWSLKEILDSLCAWGEKHITKVYGDKFTVLEESVLNDNLK

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=99, Percent_Identity=38.3838383838384, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14232; Mature: 14232

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKKYNIPVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPGITQKMLTQQLRELEA
CCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGIINRIVYNQVPPKVEYELSEYGWSLKEILDSLCAWGEKHITKVYGDKFTVLEESVLND
HHHHHHHHHHCCCCCCEEEHHHHCCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCC
NLK
CCC
>Mature Secondary Structure
MQKKKYNIPVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPGITQKMLTQQLRELEA
CCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGIINRIVYNQVPPKVEYELSEYGWSLKEILDSLCAWGEKHITKVYGDKFTVLEESVLND
HHHHHHHHHHCCCCCCEEEHHHHCCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCC
NLK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]