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The map label for this gene is ycaD [H]

Identifier: 134302400

GI number: 134302400

Start: 1440318

End: 1441571

Strand: Reverse

Name: ycaD [H]

Synonym: FTW_1533

Alternate gene names: 134302400

Gene position: 1441571-1440318 (Counterclockwise)

Preceding gene: 134302401

Following gene: 134302399

Centisome position: 75.93

GC content: 32.06

Gene sequence:

>1254_bases
TTGGAGGTTAGAGCTATGACCGTTAGACAGACTTTACTTATTATTATCACACCAATAATTGCGATGTGTGTATTATCATT
TGGCAATGGTTTTTTTACTACCTATTCGTCTATTGAATTAAATGATCTTGGTCGCTCTAGTTTAATGATCGGTATAATTT
CAGCAGCATATTTTTTTGGTATGACTGCAGGATCTTATTTTTCACAGTTTACTATAATCCGAGTAGGTTATATAAGAGCT
TTTGTGCTATTTGCATCTCTTATGGCTATCAGTACTCTGATAGTTGGTGCAAATAAGAGTGTCGCTGTTTGGATATTATT
TAGATTTCTCTGTGGTTACTCATTAGCGGCTTTATTTATCATTATTGAAAGCTGGTGTATATTATCATCAGATAAGAAAA
ACAGAGGTTTAATTTTTTCAATATATCTTTTTGTATATTATGGTACACAAGCATTGTCACAATTGATGATAAATGTTCAC
TTTAGTAATGGATTATTAGCATACTGTTTCATATCATCATTATGTAGTATTGCAATTGTATTAATGGCTTTTACAAAAAC
AGTTGCTCCTGTCCCTCACTCCAAAGAAATTTACTCTCCAGCTAAAATAATCAAAAAAGTTCCTTTAGCAATGGTTGCTA
GTGTTATTGGTGGTTCACTATTAGGCTCTATCTACACTTTATTACCTATATTTTTAGTAAGAGTTGGTAGTGACCATGAC
ATGATATCTGTATTAATGATGACTACGATTCTTGGAGGAATGTTATTACAAGTACCTATTGGTAAATTATCAGATCTTAT
TGATAGACGTAAGGTAATATTTCTAGCAGGAGCAGGTATTTTTATTACCTCAATATTTATATTTGCCTTTCATACCTCGT
ATTTTTTATTTGCCATAATTATGTTTATTTTTGGCGGTAGTGCTTTTGTGATATATCCATTATCTATATCTCATGCAAGT
GATTTTCTTAATGAAAATGAAATACTAGGAGCAATTGGGGTTTTAACAATCGCATATGGTTTGGGTTCGGTAATTAGCCC
TGTGGTAATATCTGGAGTGATGTCTGTTTTTGGACCATTTGGATTTTTTATAATTACAGCATTGCTAAGTATTAGTTTAT
GCTTATATTCAGCATATAGAATATCAGTACGTAAATCTGCTACAGATAGAGCTACATTTACTATAGCGACTCCTGAAAGT
CTTAACTTCACTGAGGCTCAGGAAATCATATCAGAGAAATCATCTGAAGAATAA

Upstream 100 bases:

>100_bases
AAAGATTGATTAAAATTTCTTTGTGAAACTTTTGATATAACTAACTTAACTTAATTAAAAGCTTTCTATATAATTTGCAA
TATTCATTATATATCTTTCT

Downstream 100 bases:

>100_bases
TCTTCAAATAAGTATATTAAATTGCAAAGCATACATAGCTAGCTTATAATTGATAAAGTTTTTGAAAAAATTGATAAAAG
ACTTAATTTATCTAAGGAGT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MEVRAMTVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFGMTAGSYFSQFTIIRVGYIRA
FVLFASLMAISTLIVGANKSVAVWILFRFLCGYSLAALFIIIESWCILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVH
FSNGLLAYCFISSLCSIAIVLMAFTKTVAPVPHSKEIYSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHD
MISVLMMTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAIIMFIFGGSAFVIYPLSISHAS
DFLNENEILGAIGVLTIAYGLGSVISPVVISGVMSVFGPFGFFIITALLSISLCLYSAYRISVRKSATDRATFTIATPES
LNFTEAQEIISEKSSEE

Sequences:

>Translated_417_residues
MEVRAMTVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFGMTAGSYFSQFTIIRVGYIRA
FVLFASLMAISTLIVGANKSVAVWILFRFLCGYSLAALFIIIESWCILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVH
FSNGLLAYCFISSLCSIAIVLMAFTKTVAPVPHSKEIYSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHD
MISVLMMTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAIIMFIFGGSAFVIYPLSISHAS
DFLNENEILGAIGVLTIAYGLGSVISPVVISGVMSVFGPFGFFIITALLSISLCLYSAYRISVRKSATDRATFTIATPES
LNFTEAQEIISEKSSEE
>Mature_417_residues
MEVRAMTVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFGMTAGSYFSQFTIIRVGYIRA
FVLFASLMAISTLIVGANKSVAVWILFRFLCGYSLAALFIIIESWCILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVH
FSNGLLAYCFISSLCSIAIVLMAFTKTVAPVPHSKEIYSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHD
MISVLMMTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAIIMFIFGGSAFVIYPLSISHAS
DFLNENEILGAIGVLTIAYGLGSVISPVVISGVMSVFGPFGFFIITALLSISLCLYSAYRISVRKSATDRATFTIATPES
LNFTEAQEIISEKSSEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=327, Percent_Identity=25.3822629969419, Blast_Score=118, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 45492; Mature: 45492

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVRAMTVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEHHHCCCHHHHHHHHHHHHHHH
MTAGSYFSQFTIIRVGYIRAFVLFASLMAISTLIVGANKSVAVWILFRFLCGYSLAALFI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
IIESWCILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVHFSNGLLAYCFISSLCSIAIV
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHH
LMAFTKTVAPVPHSKEIYSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHD
HHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
MISVLMMTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAII
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
MFIFGGSAFVIYPLSISHASDFLNENEILGAIGVLTIAYGLGSVISPVVISGVMSVFGPF
HHHHCCCEEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFFIITALLSISLCLYSAYRISVRKSATDRATFTIATPESLNFTEAQEIISEKSSEE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEVRAMTVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEHHHCCCHHHHHHHHHHHHHHH
MTAGSYFSQFTIIRVGYIRAFVLFASLMAISTLIVGANKSVAVWILFRFLCGYSLAALFI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
IIESWCILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVHFSNGLLAYCFISSLCSIAIV
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHH
LMAFTKTVAPVPHSKEIYSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHD
HHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
MISVLMMTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAII
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
MFIFGGSAFVIYPLSISHASDFLNENEILGAIGVLTIAYGLGSVISPVVISGVMSVFGPF
HHHHCCCEEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFFIITALLSISLCLYSAYRISVRKSATDRATFTIATPESLNFTEAQEIISEKSSEE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA