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The map label for this gene is pal [H]

Identifier: 134302256

GI number: 134302256

Start: 1264594

End: 1265217

Strand: Reverse

Name: pal [H]

Synonym: FTW_1344

Alternate gene names: 134302256

Gene position: 1265217-1264594 (Counterclockwise)

Preceding gene: 134302257

Following gene: 134302255

Centisome position: 66.64

GC content: 34.62

Gene sequence:

>624_bases
ATGATGAAAAAAAGGATAATGAACTTAGCAGTTATAGGTTCTATGCTTATGTTGGCAAGTTGCTCTAGTACTAGACCAGA
TAATAGTGATTTAATCAAAGATAAATATGCTGGAGTAGATAGCTCACAAGCTTTAGAGATGTCTTCGCAGATTTATGGTT
CTGATAAGCTAAGCTCAGATCAAGTTGAGCAAATGAAAAAAGAACTTATGAATATTAATTGTAGATCAGTATATTTTGGT
TTTGATAGCTATAATATTACTGATGACGCTAAAGAATGCCTTGATAAAACGGCAGACTATTTAATAGCTCATCCAGATCA
ACCAATTAAATTATCTGGTAATACTGACCCAAGAGGTAGTGAGAAGTATAACTTTAACCTTGGTCAAAAACGTGCTGAAG
CTGTGTATAATTACCTACTAGGCAAGAATGTTAATAAAGATCAAATCTGTGTAGTAAGCTATGGTAAGCTAAAACCAGCT
GCAGAGCCAACGCAGTTCTATGATGAGTTCTGTAAAGATGGTGTAAATGATGCATGTATGTACAAGGCATCAGAGAAAGC
TTTCTACTTAGACAGAAGAACAGAGATTGATTTTGGTGCTAAATGTGATGAGAGCAATTCATAG

Upstream 100 bases:

>100_bases
AGCCGATAATTATGGCGCAAGTGATACAGGGTTTGCTGATGGTGGTGGTAATTATGTTGTTTCAAGTTTTGATAATGATT
AAAAATAATAGGAGTTAAAA

Downstream 100 bases:

>100_bases
AACTAATAACTAGTCTAAATCTAATCTTACAATTTTATCTTTTACTATTTTTTTATCTTAAATTGTTCTAAAATAGTCGC
ATAATTTTTTGTTTGAATTA

Product: OmpA family protein

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSDQVEQMKKELMNINCRSVYFG
FDSYNITDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGSEKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPA
AEPTQFYDEFCKDGVNDACMYKASEKAFYLDRRTEIDFGAKCDESNS

Sequences:

>Translated_207_residues
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSDQVEQMKKELMNINCRSVYFG
FDSYNITDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGSEKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPA
AEPTQFYDEFCKDGVNDACMYKASEKAFYLDRRTEIDFGAKCDESNS
>Mature_207_residues
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSDQVEQMKKELMNINCRSVYFG
FDSYNITDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGSEKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPA
AEPTQFYDEFCKDGVNDACMYKASEKAFYLDRRTEIDFGAKCDESNS

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=162, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23279; Mature: 23279

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCHH
QVEQMKKELMNINCRSVYFGFDSYNITDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGS
HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEECCCCCEEECCCCCCCCC
EKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPAAEPTQFYDEFCKDGVNDACM
CEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEE
YKASEKAFYLDRRTEIDFGAKCDESNS
EECCCCEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCHH
QVEQMKKELMNINCRSVYFGFDSYNITDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGS
HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEECCCCCEEECCCCCCCCC
EKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPAAEPTQFYDEFCKDGVNDACM
CEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEE
YKASEKAFYLDRRTEIDFGAKCDESNS
EECCCCEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800 [H]