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The map label for this gene is rimO [H]

Identifier: 134302255

GI number: 134302255

Start: 1262343

End: 1263065

Strand: Reverse

Name: rimO [H]

Synonym: FTW_1341

Alternate gene names: 134302255

Gene position: 1263065-1262343 (Counterclockwise)

Preceding gene: 134302256

Following gene: 134302254

Centisome position: 66.53

GC content: 35.68

Gene sequence:

>723_bases
ATGAGTGGTAATTTAGTTGTTATAGGTGGCTCTGGTGCTATAGGTAACGCGGTAATTAAAAGACTAAGACAGTTATATCC
TAACGCGAATATATATGCATTTTCACGTGCTAAAGTAGTTGATTGTGTAGAGGGTGTAGTTTATGAACATATTGATTATA
CTGATGAATCAACAATCGAAAAAGCGGCAAAATATGTTTATGATAAATCAGGTTCTATTAATCTGATTTTTGTTGCTACT
GGCATATTACATACTCAAGATATAAAACCAGAGAAGTCGCTAAAAGAACTATCAGCATATAAATTTATTGAGCTTTTTAA
AGCAAATACAATTTTCCCAGCTCTTGTTGCGAAACATTTTATCCCAAAACTAGCCAAAGATACCAAATCTATATTCGCAG
CTATTTCTGCGCGTGTTGGTAGTATCTCTGATAATCAGCTTGGTGGTTGGTATGCTTACAGGGCTTCAAAAGCTGCTTTA
AATATGTTTATCAAAACAGCAAGTATTGAAACTAAGCGTTTAAATCCAAATGCTGTAATAGTTGGGCTACATCCAGGTAC
AGTCGATAGTCATCTTTCTGAACCTTTCCAAGCTAGAGTGCCTGAGGGTAAACTTTTCACACCAGAGTATTCAGCTAGTA
AGCTAATTGAAGTTTTAGATGGTTTAAAAGCCGACGATAGTGGTAAATGTTTCGCATGGGATGGCAATGAGATTATTCCA
TAG

Upstream 100 bases:

>100_bases
TCTGTATATTAAACTTTCTTAATATTCATTTATCGGTATAAAAAATCCATAATCTTATTTGTATACTTGTAGTACTAGAG
CATAATTTTGGGGGAGTGCT

Downstream 100 bases:

>100_bases
CCGGAATTTTTAGAGGTATTTTTATGAATGATAAGAGTATAACAACTAGTGAAGTTATAGAAATGGCGTGGTGTGATAAG
ACATCATTTGATGCAATCAA

Product: hypothetical protein

Products: NA

Alternate protein names: S12 MTTase; S12 methylthiotransferase; Ribosome maturation factor RimO [H]

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSGNLVVIGGSGAIGNAVIKRLRQLYPNANIYAFSRAKVVDCVEGVVYEHIDYTDESTIEKAAKYVYDKSGSINLIFVAT
GILHTQDIKPEKSLKELSAYKFIELFKANTIFPALVAKHFIPKLAKDTKSIFAAISARVGSISDNQLGGWYAYRASKAAL
NMFIKTASIETKRLNPNAVIVGLHPGTVDSHLSEPFQARVPEGKLFTPEYSASKLIEVLDGLKADDSGKCFAWDGNEIIP

Sequences:

>Translated_240_residues
MSGNLVVIGGSGAIGNAVIKRLRQLYPNANIYAFSRAKVVDCVEGVVYEHIDYTDESTIEKAAKYVYDKSGSINLIFVAT
GILHTQDIKPEKSLKELSAYKFIELFKANTIFPALVAKHFIPKLAKDTKSIFAAISARVGSISDNQLGGWYAYRASKAAL
NMFIKTASIETKRLNPNAVIVGLHPGTVDSHLSEPFQARVPEGKLFTPEYSASKLIEVLDGLKADDSGKCFAWDGNEIIP
>Mature_239_residues
SGNLVVIGGSGAIGNAVIKRLRQLYPNANIYAFSRAKVVDCVEGVVYEHIDYTDESTIEKAAKYVYDKSGSINLIFVATG
ILHTQDIKPEKSLKELSAYKFIELFKANTIFPALVAKHFIPKLAKDTKSIFAAISARVGSISDNQLGGWYAYRASKAALN
MFIKTASIETKRLNPNAVIVGLHPGTVDSHLSEPFQARVPEGKLFTPEYSASKLIEVLDGLKADDSGKCFAWDGNEIIP

Specific function: Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MTTase N-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR020612
- InterPro:   IPR013848
- InterPro:   IPR007197
- InterPro:   IPR005840 [H]

Pfam domain/function: PF04055 Radical_SAM; PF00919 UPF0004 [H]

EC number: NA

Molecular weight: Translated: 26187; Mature: 26056

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNLVVIGGSGAIGNAVIKRLRQLYPNANIYAFSRAKVVDCVEGVVYEHIDYTDESTIE
CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCHHHHH
KAAKYVYDKSGSINLIFVATGILHTQDIKPEKSLKELSAYKFIELFKANTIFPALVAKHF
HHHHHHHCCCCCEEEEEEEECEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
IPKLAKDTKSIFAAISARVGSISDNQLGGWYAYRASKAALNMFIKTASIETKRLNPNAVI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEEECCCCEEE
VGLHPGTVDSHLSEPFQARVPEGKLFTPEYSASKLIEVLDGLKADDSGKCFAWDGNEIIP
EEECCCCCHHHHCCCHHHCCCCCCEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SGNLVVIGGSGAIGNAVIKRLRQLYPNANIYAFSRAKVVDCVEGVVYEHIDYTDESTIE
CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCHHHHH
KAAKYVYDKSGSINLIFVATGILHTQDIKPEKSLKELSAYKFIELFKANTIFPALVAKHF
HHHHHHHCCCCCEEEEEEEECEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
IPKLAKDTKSIFAAISARVGSISDNQLGGWYAYRASKAALNMFIKTASIETKRLNPNAVI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEEECCCCEEE
VGLHPGTVDSHLSEPFQARVPEGKLFTPEYSASKLIEVLDGLKADDSGKCFAWDGNEIIP
EEECCCCCHHHHCCCHHHCCCCCCEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA