| Definition | Francisella tularensis subsp. tularensis WY96-3418, complete genome. |
|---|---|
| Accession | NC_009257 |
| Length | 1,898,476 |
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The map label for this gene is polA [H]
Identifier: 134301322
GI number: 134301322
Start: 202960
End: 205653
Strand: Direct
Name: polA [H]
Synonym: FTW_0196
Alternate gene names: 134301322
Gene position: 202960-205653 (Clockwise)
Preceding gene: 134301321
Following gene: 134301323
Centisome position: 10.69
GC content: 35.0
Gene sequence:
>2694_bases ATGAAAAAAATTGTTTTAGTGGATGGCTCTTCATATCTTTTTAGGGCTTATCATGCTTTACCACATCTTACTAATAGCCA AGGTGAGCCTACGGGAGCAATCATTGGTGTTATCAATATGCTTAAAAAATTACCCATAATGTATGATACTGAGTATGTTG CGGTTGTTTTTGATGCAAAGGGTAAGAACTTTCGTCATCAGTTATATCCACAATATAAAGCACATCGTAAAGATATCGAT GATGAGCTAAGAGTCCAAATTCAACCATTACATCAGATTATTGAGAAGATGGGATTTGCTGTAATCATTGAAGATGGTGT CGAGGCTGATGATGTAATAGGTACCTTAGCGCAAAAACTTCAAAAACAAGATTACCAAATTATTATTTCTACTGGCGACA AAGATATGGCTCAGCTAGTTACAGATAACATAGTCTTATATGACTCAATGAAAAATGTCACTACAGATGTTGCTGGAGTG CTAGAAAAATATCAAATTAGTCCACATCAGATGATAGATTATTTAGCCTTAATGGGAGATTCATCAGATAATATTCCAGG TATTCCAAAAGTTGGTCCTAAAACAGCAGTTAAATGGTTACAAGACTATCAAAATATTGATGGTATAATCGCAAACCAGC AGCAAATTAAGGGTAAGGTTGGTGAAAATCTACGTAACAATATTGATTTACTCAAGCTATCTTATCAGTTAGCAACAATT AAATGTGATCTTGAGCTTGATTTGACTGTAGAGGATCTGAAATGCAAGGCTGCTGATAAAGCATATTTGATAGAAGCTTA TACAAGATATGAGTTTAAATCATTATTGAAAGACTTAGATAATAGCGATATTAAGATAGTAACAAGCCAAGCACAAGCTG CTGATGTTGCTATTGAATATATTACTATTACCACACAAACTCAGCTTGATGATCTGATTGCGGAACTAGAGAAATATGAT AGCTTTGCTTTTGACACGGAAACGGATTCTTTAAATACTTATGAAGCAAACCTAGTGGGCTTATCTTTTTGTGCAAAAGA GGGACGAGCTTTTTATATCCCATTACAACATAGATACTTAGGCGTGCCACAGCAACTAGAATTAGGATTTGTCTTAGATA AGCTAAAACCATTATTTGCAGATTCTAAGAAAGTGAAAGTTGCACATAACTTCAAATTTGATGAAAAAGTTCTATCAAAA TATGCGATTGAGATAAACGGTAAAGTCGATGATACGATGATTATGGCGTATGTACTAAAAAGTAGTGGTAAGCATGATAT GGATAGTCTTTCTAAAGAGCATCTTGGCATAGAACCAATTGCTTATACTGCAATAGCTGGTACTGGTAAACAGCAACAAA CTCTGGATCAGGTAGATATCGAGATAGTTGCTAAGTACGCTGCTGAAGATGCTGATATTACTTTTAGACTTTTTAATCAC TTTAAAGCTTTATTAGAGCAAGATAAGGTTCTTTTTAAACTTTATTGTGAACTCGAAATGCCTTTGACTATCATTCTTAA TCAGATGGAGAAAACAGGTGTTAAGATAGATGCTACTAAGCTTATACAGCAAAGTGCTAGTCTTGAAACATCTATCAAAG AGCTTGAAAGCAAATGTTATAACCTCGCTGGGCAAGAATTTAACCTATCTTCACCAGTACAGTTAAGAGAAATTCTTTTC GAGAAGCTAGGACTTCCTCCAGTTAAAAAAACAGCAAAGGGTCAAGTGTCGACTTCTGAAGAGGTGCTAGTTCAATTGGC TGAGGACTATGAAATCGCAGCATTGATAATGAAATATCGCCATTTATCAAAACTTAAAAATACATATACAGATAAGCTAC CTAAAATGTTGGACGCAAATGGTCGTGTACATACCTCATATAATCAAACTGGTACCGTAACAGGTAGGCTATCCTCATCG GATCCTAATTTACAAAATATTCCTATAAAAAGTCCTGAAGGGCGTAAAATTAGGGAAGCTTTTATAGCTGAGGATGGTTA CTGTATAGTTGCTGCAGATTATTCACAAATTGAACTTAGAATCATGGCACATTTATCAAAAGATAAAAACCTTCTCAAGG TGTTTAATCAAAACTTAGATATCCATAGTGCAACAGCTGCTGAAGTTTTAGGTATTAGTATTGATGAGGTTAGTAGTGAG CAAAGAAGAAAAGCTAAAGCAATAAATTTCGGTCTTATCTATGGTATGAGTGCTTTTGGTTTAGCTAGACAGTTAGAAAT ACCACGAGCTGAAGCGCAAGAATATATTGATATCTATTTTAATCGCTATCCAAGTGTCAAAGAGTACATGACTACAGCAA AAGAGTTTGCTAAGCAAAATGGCTATGTTGAAACTATATTAGGAAGAAGATTATATTTACCAGAGATTAACTCAAAAAAT GTTATGCAGCGTAATGCAGCAGAGCGAGCAGCGATTAACGCACCAATGCAGGGCACCGCTGCTGATATTATCAAAAAAGC AATGATAAATGTTAACATGATGATCTCACAGGAGTATAATAGCGAAATTAAGATGGTGATGCAGGTTCATGATGAGCTTG TTTTTGAAGTTAAAAAAACTAAGCTTGAAGAGATAGTTGCGAAGATAAAATCTATAATGGAAGCAGCTGTAAAGCTTAAT GTGCCTTTAGAGGTGAATGTTGATTCTGGTAAGAGTTGGGATCAAGCTCATTAA
Upstream 100 bases:
>100_bases TTTAAAAATCTCATAAAACAACAATGTTACAACAAATGAATTTGCTATACTAAAGTATATATATTACTATTAAAATGATA AAAAAATTGCAATAAAATCT
Downstream 100 bases:
>100_bases ATAATTTATAGGATATTTTATGTTATTAGTAATGGATATGGGCAATTCCCATATACACATTGGTGTGTTTGATGGTGATA GAATAGTTTCTCAAATTAGA
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 897; Mature: 897
Protein sequence:
>897_residues MKKIVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKNFRHQLYPQYKAHRKDID DELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGV LEKYQISPHQMIDYLALMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATI KCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLKDLDNSDIKIVTSQAQAADVAIEYITITTQTQLDDLIAELEKYD SFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSK YAIEINGKVDDTMIMAYVLKSSGKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILF EKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTGTVTGRLSSS DPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSE QRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKN VMQRNAAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAAVKLN VPLEVNVDSGKSWDQAH
Sequences:
>Translated_897_residues MKKIVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKNFRHQLYPQYKAHRKDID DELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGV LEKYQISPHQMIDYLALMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATI KCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLKDLDNSDIKIVTSQAQAADVAIEYITITTQTQLDDLIAELEKYD SFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSK YAIEINGKVDDTMIMAYVLKSSGKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILF EKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTGTVTGRLSSS DPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSE QRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKN VMQRNAAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAAVKLN VPLEVNVDSGKSWDQAH >Mature_897_residues MKKIVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKNFRHQLYPQYKAHRKDID DELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGV LEKYQISPHQMIDYLALMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATI KCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLKDLDNSDIKIVTSQAQAADVAIEYITITTQTQLDDLIAELEKYD SFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSK YAIEINGKVDDTMIMAYVLKSSGKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILF EKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTGTVTGRLSSS DPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSE QRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKN VMQRNAAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAAVKLN VPLEVNVDSGKSWDQAH
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=465, Percent_Identity=33.9784946236559, Blast_Score=258, Evalue=1e-68, Organism=Homo sapiens, GI139394648, Length=706, Percent_Identity=27.9036827195467, Blast_Score=228, Evalue=2e-59, Organism=Escherichia coli, GI1790294, Length=921, Percent_Identity=52.3344191096634, Blast_Score=918, Evalue=0.0, Organism=Escherichia coli, GI226510970, Length=253, Percent_Identity=28.0632411067194, Blast_Score=110, Evalue=4e-25, Organism=Caenorhabditis elegans, GI86563272, Length=370, Percent_Identity=31.0810810810811, Blast_Score=172, Evalue=1e-42, Organism=Drosophila melanogaster, GI17933644, Length=581, Percent_Identity=31.4974182444062, Blast_Score=246, Evalue=8e-65,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR012337 [H]
Pfam domain/function: PF01612 3_5_exonuc; PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 101003; Mature: 101003
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAK CCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCEEEEEEECC GKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQKL CCCCHHHCCCHHHHHHCCCCHHHHEEEHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHH QKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALMGD CCCCCEEEEECCCHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC SSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATI CCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCEEEEEEEEEEEE KCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLKDLDNSDIKIVTSQAQAADVAIEY EEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEE ITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYL EEEECHHHHHHHHHHHHHHCCCEECCCCCCCCCEEHHEEEHHHHHCCCCEEEEEEHHHHC GVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLK CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHEEEEECCCCCHHHHHHHHHH SSGKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH CCCCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY HHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHH NLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYR HCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH HLSKLKNTYTDKLPKMLDANGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREA HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH FIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSE HHCCCCEEEEEECCCCEEEHEEHHHCCCHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCHH QRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQN HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC GYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVNMMISQEYN CCEEHHHCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCEEEEEECCCC SEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAAVKLNVPLEVNVDSGKSWDQAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCCCCCC >Mature Secondary Structure MKKIVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAK CCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCEEEEEEECC GKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQKL CCCCHHHCCCHHHHHHCCCCHHHHEEEHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHH QKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALMGD CCCCCEEEEECCCHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC SSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATI CCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCEEEEEEEEEEEE KCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLKDLDNSDIKIVTSQAQAADVAIEY EEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEE ITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYL EEEECHHHHHHHHHHHHHHCCCEECCCCCCCCCEEHHEEEHHHHHCCCCEEEEEEHHHHC GVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLK CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHEEEEECCCCCHHHHHHHHHH SSGKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH CCCCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY HHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHH NLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYR HCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH HLSKLKNTYTDKLPKMLDANGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREA HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH FIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSE HHCCCCEEEEEECCCCEEEHEEHHHCCCHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCHH QRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQN HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC GYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVNMMISQEYN CCEEHHHCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCEEEEEECCCC SEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAAVKLNVPLEVNVDSGKSWDQAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]