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The map label for this gene is sdhC [H]

Identifier: 134301286

GI number: 134301286

Start: 158809

End: 159189

Strand: Direct

Name: sdhC [H]

Synonym: FTW_0148

Alternate gene names: 134301286

Gene position: 158809-159189 (Clockwise)

Preceding gene: 134301282

Following gene: 134301287

Centisome position: 8.37

GC content: 35.7

Gene sequence:

>381_bases
ATGAAAAAAATTACTAATATTGACTTGATGTCAATAAAATCATATAACTTCCCAATCACAGCTATTAGCTCTATTATGCA
CCGCATATCAGGAGTTGTGTTGATAATTGCGATACCGCTTTGCGTGGTTGCGATGAACTATGCTCTTGCAGGGCCTGATG
GTTACCAGCAAACAGTTACTGTATTAACTAAATCTTGGTTTAGTGTATTTTTTTGGCTTTTTTTATCATCGATAACATAT
CACGTTTACGCTGGTATTAGACATATGATTATGGATATGGGCTTTGGTGAGAGTATGAAAGTGGCAAAAATCACTTCACT
ACTAGTTATCGTTTTGGGTGTTTTATCAGCTATTTTATGGGGGTGTTACTTATGGCTGTAA

Upstream 100 bases:

>100_bases
AATTTGTTTGAGTAAAAATATATCATTAAGAGTTGTTTGTATAACATTGGTTACATCTGATCTACTTCTCTACAAAAATT
GCTTCGGAGGAATGTCGAGC

Downstream 100 bases:

>100_bases
TTTCATTAACTTCTTCTGGAATTAAAGACTTTTTCGTACAAAGAGTTACGGCTGTAATTATTGCTGTATATTTTGGTTAT
CTTATCCTAGAAGCTTTGTA

Product: succinate dehydrogenase, cytochrome b subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLFLSSITY
HVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAILWGCYLWL

Sequences:

>Translated_126_residues
MKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLFLSSITY
HVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAILWGCYLWL
>Mature_126_residues
MKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLFLSSITY
HVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAILWGCYLWL

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=123, Percent_Identity=34.9593495934959, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14100; Mature: 14100

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVT
CCCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VLTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAILW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GCYLWL
HHHHCC
>Mature Secondary Structure
MKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVT
CCCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VLTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAILW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GCYLWL
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]