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The map label for this gene is trpB [H]

Identifier: 134301178

GI number: 134301178

Start: 9030

End: 10220

Strand: Direct

Name: trpB [H]

Synonym: FTW_0012

Alternate gene names: 134301178

Gene position: 9030-10220 (Clockwise)

Preceding gene: 134301177

Following gene: 134301179

Centisome position: 0.48

GC content: 39.55

Gene sequence:

>1191_bases
ATGTCAAAACTAAATGCTTATTTTGGTGAGTATGGTGGTCAATTTGTACCACAAATACTTGTCCCAGCTCTTGATCAACT
CGAGCAAGAATTTATAAAAGCACAAGCTGATGAATCTTTTAAGCAAGAATTTAAAGAGCTTTTGCAAGAGTATGCGGGTC
GCCCTACTGCTCTTACAAAAACTAGAAATATAGTCAAAAACACAAGAACCAAGCTCTACCTAAAACGCGAGGATCTACTA
CATGGCGGCGCTCATAAAACCAACCAAGTACTTGGTCAAGCTCTACTAGCCAAGAGAATGGGTAAAAAAGAGATAATTGC
AGAAACTGGAGCTGGGCAACATGGTGTTGCTACTGCTTTGGCTTGCGCACTACTTGATCTAAAATGTAGAGTATATATGG
GTGCTAAGGATGTTGAACGCCAAAGCCCTAATGTCTTTAGAATGAAATTAATGGGTGCTGAAGTCATACCTGTACATAGT
GGCTCAGCTACTCTTAAAGATGCTTGTAACGAAGCACTAAGAGATTGGTCAGCAAACTATAGTAAGGCTCATTACCTACT
AGGTACTGCCGCTGGACCTCATCCTTTTCCGACGATAGTTAGGGAATTTCAAAGAATGATTGGTGAAGAAACCAAACAAC
AAATGCTTGCTAAAGAAGGTAGACTACCTGATGCTGTGATTGCTTGTGTTGGAGGTGGCTCAAATGCTATCGGTATGTTT
GCTGACTTTATTGATGAAAAAAATGTCAAGCTTATAGGTGTAGAACCTGCTGGTAAAGGTATCGAAACTGGTGAGCATGG
AGCTCCGCTTAAACATGGTAAAACTGGTATATTTTTTGGTATGAAGGCACCACTAATGCAAAACTCAGACGGACAAATTG
AAGAGTCATACTCTATATCAGCTGGTCTGGATTTTCCATCTGTTGGACCTCAACACGCTCATTTATTAGCAATATGTCGT
GCTAAATATGCATCTGCTACAGATGATGAAGCGTTAGATGCTTTTAAATTACTCTGTAAAAAAGAAGGAATTATCCCAGC
TCTAGAATCATCTCACGCCCTAGCACACGCTCTTAAACTTGCTTATGAGGATCCTAATAAAGAGCAACTTTTGGTTGTTA
ATCTATCTGGGCGTGGTGATAAGGATATTTTTACAGTGCATGATATTTTAAAAGAAAAGGGAGAGATTTAA

Upstream 100 bases:

>100_bases
ACAATTTAAAATAATATTCATATCCGCTACCTTTCTACTCTAGCCTTTAGGGTAAATATTAGCGATAATATAAGTATTAA
AATTTAATCATAGTATTTAA

Downstream 100 bases:

>100_bases
TGACAAATAGATACACAACCCTTTTTGCAAATTTAGAGAAAAGAAATGAAGGAGCTTTTATACCTTTTGTAACAATTGGT
GATCCTAATAAAGCGCTATC

Product: tryptophan synthase subunit beta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSKLNAYFGEYGGQFVPQILVPALDQLEQEFIKAQADESFKQEFKELLQEYAGRPTALTKTRNIVKNTRTKLYLKREDLL
HGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHS
GSATLKDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMF
ADFIDEKNVKLIGVEPAGKGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAICR
AKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKLAYEDPNKEQLLVVNLSGRGDKDIFTVHDILKEKGEI

Sequences:

>Translated_396_residues
MSKLNAYFGEYGGQFVPQILVPALDQLEQEFIKAQADESFKQEFKELLQEYAGRPTALTKTRNIVKNTRTKLYLKREDLL
HGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHS
GSATLKDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMF
ADFIDEKNVKLIGVEPAGKGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAICR
AKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKLAYEDPNKEQLLVVNLSGRGDKDIFTVHDILKEKGEI
>Mature_395_residues
SKLNAYFGEYGGQFVPQILVPALDQLEQEFIKAQADESFKQEFKELLQEYAGRPTALTKTRNIVKNTRTKLYLKREDLLH
GGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHSG
SATLKDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMFA
DFIDEKNVKLIGVEPAGKGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAICRA
KYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKLAYEDPNKEQLLVVNLSGRGDKDIFTVHDILKEKGEI

Specific function: The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine [H]

COG id: COG0133

COG function: function code E; Tryptophan synthase beta chain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trpB family [H]

Homologues:

Organism=Escherichia coli, GI1787515, Length=393, Percent_Identity=81.4249363867684, Blast_Score=672, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6321412, Length=389, Percent_Identity=52.4421593830334, Blast_Score=414, Evalue=1e-117,

Paralogues:

None

Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001926
- InterPro:   IPR006653
- InterPro:   IPR006654
- InterPro:   IPR023026 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.2.1.20 [H]

Molecular weight: Translated: 43125; Mature: 42994

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS00168 TRP_SYNTHASE_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLNAYFGEYGGQFVPQILVPALDQLEQEFIKAQADESFKQEFKELLQEYAGRPTALTK
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHH
TRNIVKNTRTKLYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATAL
HHHHHHHHHHHEEEEHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHH
ACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHSGSATLKDACNEALRDWSANY
HHHHHHHHHEEEECCHHHHCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCC
SKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMF
CHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH
ADFIDEKNVKLIGVEPAGKGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSIS
HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEE
AGLDFPSVGPQHAHLLAICRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL
CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AYEDPNKEQLLVVNLSGRGDKDIFTVHDILKEKGEI
HHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKLNAYFGEYGGQFVPQILVPALDQLEQEFIKAQADESFKQEFKELLQEYAGRPTALTK
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHH
TRNIVKNTRTKLYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATAL
HHHHHHHHHHHEEEEHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHH
ACALLDLKCRVYMGAKDVERQSPNVFRMKLMGAEVIPVHSGSATLKDACNEALRDWSANY
HHHHHHHHHEEEECCHHHHCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCC
SKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMF
CHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH
ADFIDEKNVKLIGVEPAGKGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSIS
HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEE
AGLDFPSVGPQHAHLLAICRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL
CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AYEDPNKEQLLVVNLSGRGDKDIFTVHDILKEKGEI
HHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA