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The map label for this gene is ssb [H]

Identifier: 134300456

GI number: 134300456

Start: 2842523

End: 2843197

Strand: Reverse

Name: ssb [H]

Synonym: Dred_2617

Alternate gene names: 134300456

Gene position: 2843197-2842523 (Counterclockwise)

Preceding gene: 134300457

Following gene: 134300455

Centisome position: 78.8

GC content: 48.89

Gene sequence:

>675_bases
ATGAACTCTGTCAACATTATTGGTCGCTTAACCCGTGACCCAGAACTAAGATATACCCAGAATGGTAAAGCGGTAACCAA
TATGTCTATCGCTGTACAGAGATATGGCAATAAGGATGAGGCTGATTTTTTTGACTGCACTGCTTTTGAAAAGACCGCTG
AAACAATTGCCAATAACTTAACTAAGGGCCGTGAGGTTGGTGTTTCCGGCCGCTTACAGCAAGAACGCTGGGATGACCAA
CAAACAGGTCAGAAACGTTCCGCAGTAAAAATTATGGTTAATTCAATTACCTTTATTGGGCCAAAACAGGATAATCAACA
GCAATCACCTAACCAGCCACCTGCTCAACAGCAACAATACCAGGGGCCACCTCAGGGATACCAGCAGCAGGGTTTCCAAC
AACCACCTGGTTATATTCCGCCTTCTCAGGGAGGATACCCACTACCACAAGGATACCCTGGACAAATGCCACCACAAGGG
CCGCCGCCAGGGCAGTACAGCCAGCAACCCGGACAGTATCAGCAACAACCACCAGGATATCAACAAACACCTGCTGGGCC
ACCTAATGGTCAGCCTCCCCAGGGACAGATTGATTTCCAGTTCCAGGGTCAGGGGCAAGGACAGCAACCTCCGGCTAACG
GGTTCCAGGGCAATATTGACGATATCCCCTTTTAA

Upstream 100 bases:

>100_bases
AACAGCGTTACCATAAACCAGCTAACCAACTAACAGACCCAGAGTTGGCAACCATGGTCAGCGAAGCACAAGGATACTTA
CAACAAAGGATGGTGTAAAT

Downstream 100 bases:

>100_bases
ACCATGTTCAAGTTAAGACCATATCAAGAATTACTCATTGAAGGCGTCCGGGATGAATTTCGTTCCGGACGCCGTAAAAC
CTGTATAGTTGCTCCCTGTG

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MNSVNIIGRLTRDPELRYTQNGKAVTNMSIAVQRYGNKDEADFFDCTAFEKTAETIANNLTKGREVGVSGRLQQERWDDQ
QTGQKRSAVKIMVNSITFIGPKQDNQQQSPNQPPAQQQQYQGPPQGYQQQGFQQPPGYIPPSQGGYPLPQGYPGQMPPQG
PPPGQYSQQPGQYQQQPPGYQQTPAGPPNGQPPQGQIDFQFQGQGQGQQPPANGFQGNIDDIPF

Sequences:

>Translated_224_residues
MNSVNIIGRLTRDPELRYTQNGKAVTNMSIAVQRYGNKDEADFFDCTAFEKTAETIANNLTKGREVGVSGRLQQERWDDQ
QTGQKRSAVKIMVNSITFIGPKQDNQQQSPNQPPAQQQQYQGPPQGYQQQGFQQPPGYIPPSQGGYPLPQGYPGQMPPQG
PPPGQYSQQPGQYQQQPPGYQQTPAGPPNGQPPQGQIDFQFQGQGQGQQPPANGFQGNIDDIPF
>Mature_224_residues
MNSVNIIGRLTRDPELRYTQNGKAVTNMSIAVQRYGNKDEADFFDCTAFEKTAETIANNLTKGREVGVSGRLQQERWDDQ
QTGQKRSAVKIMVNSITFIGPKQDNQQQSPNQPPAQQQQYQGPPQGYQQQGFQQPPGYIPPSQGGYPLPQGYPGQMPPQG
PPPGQYSQQPGQYQQQPPGYQQTPAGPPNGQPPQGQIDFQFQGQGQGQQPPANGFQGNIDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=101, Percent_Identity=33.6633663366337, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 24672; Mature: 24672

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVNIIGRLTRDPELRYTQNGKAVTNMSIAVQRYGNKDEADFFDCTAFEKTAETIANNL
CCCCCEEEEECCCCCCEEECCCCEEEHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
TKGREVGVSGRLQQERWDDQQTGQKRSAVKIMVNSITFIGPKQDNQQQSPNQPPAQQQQY
HCCCCCCCCCCCHHHHCCHHHHCCHHHHHEEEEHHEEEECCCCCCCCCCCCCCCHHHHHC
QGPPQGYQQQGFQQPPGYIPPSQGGYPLPQGYPGQMPPQGPPPGQYSQQPGQYQQQPPGY
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QQTPAGPPNGQPPQGQIDFQFQGQGQGQQPPANGFQGNIDDIPF
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNSVNIIGRLTRDPELRYTQNGKAVTNMSIAVQRYGNKDEADFFDCTAFEKTAETIANNL
CCCCCEEEEECCCCCCEEECCCCEEEHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
TKGREVGVSGRLQQERWDDQQTGQKRSAVKIMVNSITFIGPKQDNQQQSPNQPPAQQQQY
HCCCCCCCCCCCHHHHCCHHHHCCHHHHHEEEEHHEEEECCCCCCCCCCCCCCCHHHHHC
QGPPQGYQQQGFQQPPGYIPPSQGGYPLPQGYPGQMPPQGPPPGQYSQQPGQYQQQPPGY
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QQTPAGPPNGQPPQGQIDFQFQGQGQGQQPPANGFQGNIDDIPF
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]