Click here to switch to the map view.

The map label for this gene is sigI [H]

Identifier: 134300148

GI number: 134300148

Start: 2525868

End: 2526620

Strand: Reverse

Name: sigI [H]

Synonym: Dred_2309

Alternate gene names: 134300148

Gene position: 2526620-2525868 (Counterclockwise)

Preceding gene: 134300149

Following gene: 134300147

Centisome position: 70.03

GC content: 45.55

Gene sequence:

>753_bases
TTGACGTTAGAACAATATACGGCACTGTACCTGAACCAGGCTAGGAATGGCGATACGCAAGTGAGAGAAGAACTATTAGC
CAGTGCTAAACCGTTTATTCAAGGTACCTGTATAAAGGTTTGTAATCGTCCCCTGGAATGGGGGCGTGACGATGAATTAA
GCATTGGCTTGATGGCTTTTAACGAAGCCATTGATCGGTTTGCAGAAGAGAAAAACATTCCATTTCTTGGTTTTGCCCGG
TTAGTTATAAAGAGTCGCCTTTCAGATCATTTCCGCAAAGAGTCCCGGCACAGACATCAACCACTGGAATACCAAGTGGC
TGACCATGCGCCGGTGCAGCATGAGACTGCTCAGGCCTGGGAGAAATACATGCAGGAAGCAGAAATGCAAGAGCGCCAGG
AAGAAGTGCTGGAATTTCAAAAGGAACTTGCTCAGTATGGTATTAGTGTTAGTGAACTGGTTGATGCTTCGCCCAAACAC
AGGGACTCCAGAGAAAACCTCATTTCTGTGGCCAGATTAGTGGCTGAAACAACTTCTCTTATGGAGCAGCTGTTACGTAC
CGGTCGGCTACCCGTTAAGGAACTGGCATTAGCTTCGGGTCTGCATCGTAAAACCCTTGAAAAGGGACGGCGCTATATCA
TTGCCATGTCCATTTTGCTTTATCACAGAGACCGATTTATCTATCTCTTTTCATATTTAAAATTAACTGGTTGGTCAGAA
GGAAAGGGGGGAAGCAACTATGGCAAAGGTTAA

Upstream 100 bases:

>100_bases
TTAATACCCGCTTAAAAAAAAAAATAAAACCGTAATCTATAGCATAACAAAAGATAGGTTACCAGAGGGGGAGTAGTTGG
GTCAGGAGGAGTGACCACCT

Downstream 100 bases:

>100_bases
GGGAATCCTAGTACAAAAGAAAGGACCTCTTGGTGTGCTGATGACCTCCGAAGGACGTTTTATTAGAGTTATGCTAATCG
GCAAGGACAATAGCTTAGGC

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTLEQYTALYLNQARNGDTQVREELLASAKPFIQGTCIKVCNRPLEWGRDDELSIGLMAFNEAIDRFAEEKNIPFLGFAR
LVIKSRLSDHFRKESRHRHQPLEYQVADHAPVQHETAQAWEKYMQEAEMQERQEEVLEFQKELAQYGISVSELVDASPKH
RDSRENLISVARLVAETTSLMEQLLRTGRLPVKELALASGLHRKTLEKGRRYIIAMSILLYHRDRFIYLFSYLKLTGWSE
GKGGSNYGKG

Sequences:

>Translated_250_residues
MTLEQYTALYLNQARNGDTQVREELLASAKPFIQGTCIKVCNRPLEWGRDDELSIGLMAFNEAIDRFAEEKNIPFLGFAR
LVIKSRLSDHFRKESRHRHQPLEYQVADHAPVQHETAQAWEKYMQEAEMQERQEEVLEFQKELAQYGISVSELVDASPKH
RDSRENLISVARLVAETTSLMEQLLRTGRLPVKELALASGLHRKTLEKGRRYIIAMSILLYHRDRFIYLFSYLKLTGWSE
GKGGSNYGKG
>Mature_249_residues
TLEQYTALYLNQARNGDTQVREELLASAKPFIQGTCIKVCNRPLEWGRDDELSIGLMAFNEAIDRFAEEKNIPFLGFARL
VIKSRLSDHFRKESRHRHQPLEYQVADHAPVQHETAQAWEKYMQEAEMQERQEEVLEFQKELAQYGISVSELVDASPKHR
DSRENLISVARLVAETTSLMEQLLRTGRLPVKELALASGLHRKTLEKGRRYIIAMSILLYHRDRFIYLFSYLKLTGWSEG
KGGSNYGKG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 28888; Mature: 28757

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEQYTALYLNQARNGDTQVREELLASAKPFIQGTCIKVCNRPLEWGRDDELSIGLMAF
CCHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCCCCCCHHHHHH
NEAIDRFAEEKNIPFLGFARLVIKSRLSDHFRKESRHRHQPLEYQVADHAPVQHETAQAW
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH
EKYMQEAEMQERQEEVLEFQKELAQYGISVSELVDASPKHRDSRENLISVARLVAETTSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
MEQLLRTGRLPVKELALASGLHRKTLEKGRRYIIAMSILLYHRDRFIYLFSYLKLTGWSE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
GKGGSNYGKG
CCCCCCCCCC
>Mature Secondary Structure 
TLEQYTALYLNQARNGDTQVREELLASAKPFIQGTCIKVCNRPLEWGRDDELSIGLMAF
CHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCCCCCCHHHHHH
NEAIDRFAEEKNIPFLGFARLVIKSRLSDHFRKESRHRHQPLEYQVADHAPVQHETAQAW
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH
EKYMQEAEMQERQEEVLEFQKELAQYGISVSELVDASPKHRDSRENLISVARLVAETTSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
MEQLLRTGRLPVKELALASGLHRKTLEKGRRYIIAMSILLYHRDRFIYLFSYLKLTGWSE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
GKGGSNYGKG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]