| Definition | Desulfotomaculum reducens MI-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009253 |
| Length | 3,608,104 |
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The map label for this gene is 134300069
Identifier: 134300069
GI number: 134300069
Start: 2433659
End: 2434675
Strand: Reverse
Name: 134300069
Synonym: Dred_2227
Alternate gene names: NA
Gene position: 2434675-2433659 (Counterclockwise)
Preceding gene: 134300070
Following gene: 134300068
Centisome position: 67.48
GC content: 39.63
Gene sequence:
>1017_bases ATGAATAAGTCATTTGTAAGAATCTTGGTAGGATTGTGTTGTGCAACATTGTTTCTTGGTATTTTATCCGGCTGTTCTTT GACTTCTAAGGAGTCAACTGAAGCCACCAGTGGCACGGAGAAAATGTATAAAATCGGTATAACGCAGATAGCAGATCATC CATCTTTAGATAATTGCCGTGAGGGTTTCATTGAAGGGCTAAAAGCAGAGGGTTTTGAAGAAGGGAAAAACGTTACCTTT GATTACAAAAGTGCCAAAGGCGAAATAGCAACAGCAAACACCATTGCAACAAGCTTTGTTGGTAATAATTATGATCTTAT TTGTGCAATTGCAACTCCATCTGCTCAGACAGCTTATACAGCCGCAGCTGAGAAAAAGATACCAGTTATTTTCTCAGCTG TTTCTGATCCAGTTGCTGCAAAACTTGTCAATTCCCTTGAAAAACCCGGCAAAGGTTCAACCGGCACAAGTGATATTATC CCAGTTGAAAAACAACTGGAAATGATCAGGGCCTTTATGCCAAAGGCGAAAAAAGTAGGTATTCTATACAACACCAGTGA ACCGAATTCTGCCACTCAGATTGCTATGTATGAAGCTGCTGCGGCAAAATTCAATTTTGAAATCGTTAAGGTTGGCGTTG CGGCCCAAGCCGATATTCCCATGGCCACCGATAACATTTTAGCAAAGGTTGATTGTATAACCAACCTTACCGATAACCTT GTTGTTTCCAATCTTCAAACGGTGTTAGGTAAAGCAAATGCAAAGAAAATTCCTGTATTTGGCTCAGAAGAAGAGCAGGT AAAAAATGGCTGTCTTGCTTCCCAGGGTATCGATTATATCAAGCTGGGTATGCAAACTGGTAAAATAGCCGCCAGGGTTT TAAAAGGTGAAGATATTAATAATATCGCCGTCGAAACAATCAAAGAAAGTAAATTAGTTGTTAATGAGAATGTTTTGAAA AACTTGAGCCTTACACTACCGGCAAGCCTTAAAGATACTGCACAAATGGTGAAATAA
Upstream 100 bases:
>100_bases CATTTTGACCAATTTGGGTGGTACCGCAGGAATTTACTCTTGTCCCTTTCTAAGGGATAAGAGTTTTTTATTTTATAATT TAATAGGGGGTATAGAAAAA
Downstream 100 bases:
>100_bases AAAAGGTTCAAAAATATCGGAGGCATAAAAATGTTTGAAATAATTGTTGGTGTTTTTGAACAGGGTTTCATATATGGCAT AATGGCTCTAGGAGTATATA
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter; Lipoprotein; ABC Transporter Periplasmic Protein; ABC Transporter Permease; ABC-Type Transporter Periplasmic Component; Permease; Permease Protein; Exported Protein; ABC-Type Transporter; ABC-Type Transport Protein Periplasmic C; ABC Transporter Permease Protein
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MNKSFVRILVGLCCATLFLGILSGCSLTSKESTEATSGTEKMYKIGITQIADHPSLDNCREGFIEGLKAEGFEEGKNVTF DYKSAKGEIATANTIATSFVGNNYDLICAIATPSAQTAYTAAAEKKIPVIFSAVSDPVAAKLVNSLEKPGKGSTGTSDII PVEKQLEMIRAFMPKAKKVGILYNTSEPNSATQIAMYEAAAAKFNFEIVKVGVAAQADIPMATDNILAKVDCITNLTDNL VVSNLQTVLGKANAKKIPVFGSEEEQVKNGCLASQGIDYIKLGMQTGKIAARVLKGEDINNIAVETIKESKLVVNENVLK NLSLTLPASLKDTAQMVK
Sequences:
>Translated_338_residues MNKSFVRILVGLCCATLFLGILSGCSLTSKESTEATSGTEKMYKIGITQIADHPSLDNCREGFIEGLKAEGFEEGKNVTF DYKSAKGEIATANTIATSFVGNNYDLICAIATPSAQTAYTAAAEKKIPVIFSAVSDPVAAKLVNSLEKPGKGSTGTSDII PVEKQLEMIRAFMPKAKKVGILYNTSEPNSATQIAMYEAAAAKFNFEIVKVGVAAQADIPMATDNILAKVDCITNLTDNL VVSNLQTVLGKANAKKIPVFGSEEEQVKNGCLASQGIDYIKLGMQTGKIAARVLKGEDINNIAVETIKESKLVVNENVLK NLSLTLPASLKDTAQMVK >Mature_338_residues MNKSFVRILVGLCCATLFLGILSGCSLTSKESTEATSGTEKMYKIGITQIADHPSLDNCREGFIEGLKAEGFEEGKNVTF DYKSAKGEIATANTIATSFVGNNYDLICAIATPSAQTAYTAAAEKKIPVIFSAVSDPVAAKLVNSLEKPGKGSTGTSDII PVEKQLEMIRAFMPKAKKVGILYNTSEPNSATQIAMYEAAAAKFNFEIVKVGVAAQADIPMATDNILAKVDCITNLTDNL VVSNLQTVLGKANAKKIPVFGSEEEQVKNGCLASQGIDYIKLGMQTGKIAARVLKGEDINNIAVETIKESKLVVNENVLK NLSLTLPASLKDTAQMVK
Specific function: Unknown
COG id: COG2984
COG function: function code R; ABC-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35943; Mature: 35943
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKSFVRILVGLCCATLFLGILSGCSLTSKESTEATSGTEKMYKIGITQIADHPSLDNCR CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH EGFIEGLKAEGFEEGKNVTFDYKSAKGEIATANTIATSFVGNNYDLICAIATPSAQTAYT HHHHHHHCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHCCCCCEEEEEEECCCCCHHHH AAAEKKIPVIFSAVSDPVAAKLVNSLEKPGKGSTGTSDIIPVEKQLEMIRAFMPKAKKVG HHHCCCCCEEEEHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE ILYNTSEPNSATQIAMYEAAAAKFNFEIVKVGVAAQADIPMATDNILAKVDCITNLTDNL EEEECCCCCCCCEEEEHHHHHHHCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCHHHH VVSNLQTVLGKANAKKIPVFGSEEEQVKNGCLASQGIDYIKLGMQTGKIAARVLKGEDIN HHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHCCCCEEEECCCHHHHHHHHHCCCCCC NIAVETIKESKLVVNENVLKNLSLTLPASLKDTAQMVK HHHHHHHHCCCEEECHHHHHCCCEECCCCHHHHHHHCC >Mature Secondary Structure MNKSFVRILVGLCCATLFLGILSGCSLTSKESTEATSGTEKMYKIGITQIADHPSLDNCR CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH EGFIEGLKAEGFEEGKNVTFDYKSAKGEIATANTIATSFVGNNYDLICAIATPSAQTAYT HHHHHHHCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHCCCCCEEEEEEECCCCCHHHH AAAEKKIPVIFSAVSDPVAAKLVNSLEKPGKGSTGTSDIIPVEKQLEMIRAFMPKAKKVG HHHCCCCCEEEEHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE ILYNTSEPNSATQIAMYEAAAAKFNFEIVKVGVAAQADIPMATDNILAKVDCITNLTDNL EEEECCCCCCCCEEEEHHHHHHHCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCHHHH VVSNLQTVLGKANAKKIPVFGSEEEQVKNGCLASQGIDYIKLGMQTGKIAARVLKGEDIN HHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHCCCCEEEECCCHHHHHHHHHCCCCCC NIAVETIKESKLVVNENVLKNLSLTLPASLKDTAQMVK HHHHHHHHCCCEEECHHHHHCCCEECCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA