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The map label for this gene is pqqE [H]

Identifier: 134300007

GI number: 134300007

Start: 2364588

End: 2365760

Strand: Reverse

Name: pqqE [H]

Synonym: Dred_2161

Alternate gene names: 134300007

Gene position: 2365760-2364588 (Counterclockwise)

Preceding gene: 134300008

Following gene: 134300006

Centisome position: 65.57

GC content: 47.49

Gene sequence:

>1173_bases
ATGATTAGTATTAGTAAGCTGCTCTGTGATACACAAAATTACGGAGACTCTTTGCGCTATGACCATGGCGCCAAGGGGCA
GGTGCACGGTGCTGTGGCCGGTCATGGACCGGTGGTGGTTTGGAACACGACCCGTACCTGTAACCTGAGGTGTCGTCACT
GCTATTCAGAGTCCGACAGTAAAAAATATAACGAACTTAACACCCAGGAAGCCAAGCAATTTATTAACGATTTGGCTGAA
TTCAAAGTACCAGTAATCCTATTCTCAGGTGGTGAGCCTTTGGTACGCCCGGACTTTTTTGAACTGGCCGGGTATGCTAC
GCAAAAGGGCATTCGGACCACCATCTCCACTAACGGTACTTTGATTACACCAGAGGCTGCAGCCCGCATCAAGGATATAG
GTGTAGGCTATGTAGGCATCAGCCTTGATGGTATTGGCGAAGTTAATGATACATTTAGAGGTCGCAAAGGGGCCTATGAA
GCAGCCCTAGCGGGCATTCGCAACTGTTTGGCGGTGGGACAAAGAGTAGGTCTGCGTTTTACCATTAATCGCCATAACCA
TACGGAATTAAACCAAATCTTTGATCTTATTGAACAAGAGAATATCCCAAGGGTATGTTTTTACCACTTGGTTTACTCTG
GTCGGGGCAGTGAAATGATTAAGGAAGATATTTCTCTGGAAGAAAGCCGTGCCGTTCTGGATTTAATAATGGAACGCACA
CTGGATTTTCACCGCAGGGGTCTGGACAAAGAGATTTTGACTGTTGATAACCATGCTGACGCCATTTATCTTTACCTGAA
ACTCCTTAAAGAGAACCCAGCACAGGCCCAGAAGGTACTTGAACTCTTGTCCCGTAATGGTGGCAATCGTACTGGCATCG
CCATTGGTGAGGTGGATTGGGAAGGAAATGTACATGCCGACCAGTTTACTCGAAATCACCGCTTTGGGAATGTCAGAGAA
CGGAAATTCGGAGAGGTTTGGACCGACCTAAGCCATCCCATTCTGGCTGGGCTCAAGGATCGAAAACCACTTCTCAAAGG
ACGCTGTGCCCAATGCAAATGGCTGAACCTCTGCAACGGTAATTTCCGAGCCCGGGCTGAAGCTGTCTATGGAGACTTTT
GGATGGAAGACCCCGCCTGTTATTTAACCGATGAAGAAATAGGGATTGCTTGA

Upstream 100 bases:

>100_bases
CGGTCTTGTACAGGCTATAACCGAGCATTTTACCGGTCAAAAAGATTCTTAAGATATCTTTTACGGCTGGATTAAAAATC
TATAGAAAAGTGGGAGCTTT

Downstream 100 bases:

>100_bases
ATGTCTAGCCATTAACTTACTGGCCTATGACCAGTGGTTGTTGGCTTATCCTATAATTATAGGTTCCATAATAAACCAAT
CATGGAGGTGCTAACCATGC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MISISKLLCDTQNYGDSLRYDHGAKGQVHGAVAGHGPVVVWNTTRTCNLRCRHCYSESDSKKYNELNTQEAKQFINDLAE
FKVPVILFSGGEPLVRPDFFELAGYATQKGIRTTISTNGTLITPEAAARIKDIGVGYVGISLDGIGEVNDTFRGRKGAYE
AALAGIRNCLAVGQRVGLRFTINRHNHTELNQIFDLIEQENIPRVCFYHLVYSGRGSEMIKEDISLEESRAVLDLIMERT
LDFHRRGLDKEILTVDNHADAIYLYLKLLKENPAQAQKVLELLSRNGGNRTGIAIGEVDWEGNVHADQFTRNHRFGNVRE
RKFGEVWTDLSHPILAGLKDRKPLLKGRCAQCKWLNLCNGNFRARAEAVYGDFWMEDPACYLTDEEIGIA

Sequences:

>Translated_390_residues
MISISKLLCDTQNYGDSLRYDHGAKGQVHGAVAGHGPVVVWNTTRTCNLRCRHCYSESDSKKYNELNTQEAKQFINDLAE
FKVPVILFSGGEPLVRPDFFELAGYATQKGIRTTISTNGTLITPEAAARIKDIGVGYVGISLDGIGEVNDTFRGRKGAYE
AALAGIRNCLAVGQRVGLRFTINRHNHTELNQIFDLIEQENIPRVCFYHLVYSGRGSEMIKEDISLEESRAVLDLIMERT
LDFHRRGLDKEILTVDNHADAIYLYLKLLKENPAQAQKVLELLSRNGGNRTGIAIGEVDWEGNVHADQFTRNHRFGNVRE
RKFGEVWTDLSHPILAGLKDRKPLLKGRCAQCKWLNLCNGNFRARAEAVYGDFWMEDPACYLTDEEIGIA
>Mature_390_residues
MISISKLLCDTQNYGDSLRYDHGAKGQVHGAVAGHGPVVVWNTTRTCNLRCRHCYSESDSKKYNELNTQEAKQFINDLAE
FKVPVILFSGGEPLVRPDFFELAGYATQKGIRTTISTNGTLITPEAAARIKDIGVGYVGISLDGIGEVNDTFRGRKGAYE
AALAGIRNCLAVGQRVGLRFTINRHNHTELNQIFDLIEQENIPRVCFYHLVYSGRGSEMIKEDISLEESRAVLDLIMERT
LDFHRRGLDKEILTVDNHADAIYLYLKLLKENPAQAQKVLELLSRNGGNRTGIAIGEVDWEGNVHADQFTRNHRFGNVRE
RKFGEVWTDLSHPILAGLKDRKPLLKGRCAQCKWLNLCNGNFRARAEAVYGDFWMEDPACYLTDEEIGIA

Specific function: Together With Moac, Is Involved In The Conversion Of A Guanosine Derivative (Gxp) Into Molybdopterin Precursor Z. [C]

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 43806; Mature: 43806

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISISKLLCDTQNYGDSLRYDHGAKGQVHGAVAGHGPVVVWNTTRTCNLRCRHCYSESDS
CCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEECCEEEECCCCCCC
KKYNELNTQEAKQFINDLAEFKVPVILFSGGEPLVRPDFFELAGYATQKGIRTTISTNGT
HHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC
LITPEAAARIKDIGVGYVGISLDGIGEVNDTFRGRKGAYEAALAGIRNCLAVGQRVGLRF
EECCHHHHHHHHCCCEEEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEE
TINRHNHTELNQIFDLIEQENIPRVCFYHLVYSGRGSEMIKEDISLEESRAVLDLIMERT
EECCCCCHHHHHHHHHHHHCCCCHHEEEHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHH
LDFHRRGLDKEILTVDNHADAIYLYLKLLKENPAQAQKVLELLSRNGGNRTGIAIGEVDW
HHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECC
EGNVHADQFTRNHRFGNVRERKFGEVWTDLSHPILAGLKDRKPLLKGRCAQCKWLNLCNG
CCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHCCCCCEEEEECCCC
NFRARAEAVYGDFWMEDPACYLTDEEIGIA
CCEEEEHEEECCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MISISKLLCDTQNYGDSLRYDHGAKGQVHGAVAGHGPVVVWNTTRTCNLRCRHCYSESDS
CCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEECCEEEECCCCCCC
KKYNELNTQEAKQFINDLAEFKVPVILFSGGEPLVRPDFFELAGYATQKGIRTTISTNGT
HHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC
LITPEAAARIKDIGVGYVGISLDGIGEVNDTFRGRKGAYEAALAGIRNCLAVGQRVGLRF
EECCHHHHHHHHCCCEEEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEE
TINRHNHTELNQIFDLIEQENIPRVCFYHLVYSGRGSEMIKEDISLEESRAVLDLIMERT
EECCCCCHHHHHHHHHHHHCCCCHHEEEHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHH
LDFHRRGLDKEILTVDNHADAIYLYLKLLKENPAQAQKVLELLSRNGGNRTGIAIGEVDW
HHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECC
EGNVHADQFTRNHRFGNVRERKFGEVWTDLSHPILAGLKDRKPLLKGRCAQCKWLNLCNG
CCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHCCCCCEEEEECCCC
NFRARAEAVYGDFWMEDPACYLTDEEIGIA
CCEEEEHEEECCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA