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The map label for this gene is dnaD [H]

Identifier: 134299949

GI number: 134299949

Start: 2301529

End: 2302371

Strand: Reverse

Name: dnaD [H]

Synonym: Dred_2103

Alternate gene names: 134299949

Gene position: 2302371-2301529 (Counterclockwise)

Preceding gene: 134299950

Following gene: 134299948

Centisome position: 63.81

GC content: 37.6

Gene sequence:

>843_bases
ATGTCTCAGAACAATAGACGGGCTCTAAAAAAAGAATTTGATGCTACCAACATGACCGTTTATTTTGGTTCAGCTATTTT
TTCCGGAGGAATAACGGGTATACCAAATTTGTTTCTTAAGTACTACCGAGACGTAGGTATTACGGATTCGGAAATGATGT
TAGTTATCCAGTTACTAAGGCTTCGCAATGAAGAAAATATGTTAATGCCAAAGCTGGAGATTTTGGCTGGTTGCCTTTCT
GCTGAGCCTGCCCAGATTGAGAAGCAGATTAAGAGCCTTCTTGATAAACGAGTTATTGGGATAACAAATTATTACATAGG
TGAAGAAGGTGTTGTCAAACAAGGATATGATTTTGAACCCCTTGTGTTTGAATTATCCGAAGTATGGGCGTTAAATCAAA
AGAAAGAGCTAGATAATATTTCAGAGCAGTTGAATAACCCTGGTGGCAGGTTAAAACGTGTAGAGGAAGATCCTGGCTTT
GTATTATCATCTCAAGAGCAGGATTTATGCCAGGCCTTTGAAAATGAATTTGGTAGGCTTCTTTCTCCGATGGAAATTGA
ACAAATTATTGCTTGGCTAGAAGATCACGAAACGGAATTAATATTGGAAGCTTTAAGACAAGCAGTTATCAGAGGTAAAC
ATAATTTCAAGTACATTGGTAGCATACTTAGGGAATGGTATAAAAATAATATTAGGACAATAAAAGAAGTAGAGAGTTAC
CAACGTCAGTTTGAACAAAACAGATTAAAGCAACAGCTTCCGCGAAAAACAGGGTCAGGATCCGAATCTAACAATAGGGC
AGACCTAAAGAAGAAAACCCTTATGAGATCCATGTACAGCTAA

Upstream 100 bases:

>100_bases
ACAAAGTCCATTTTTTAATCAAGTTTGTCGAGAAACGATTGTGGACAAGGTTATCAATTTTACCATACAATATTATCAGG
AAATATGAGGGGGTTGGGGC

Downstream 100 bases:

>100_bases
TAGTATGCCATAAAAAACGCCATTTAGGCGTTTTTTGTTCTCTATGTATATTCTTAGTAAAATTGTACAAACTATGTTTT
GGGTAAGAAAGGAGGAATTA

Product: primosome, DnaD subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSQNNRRALKKEFDATNMTVYFGSAIFSGGITGIPNLFLKYYRDVGITDSEMMLVIQLLRLRNEENMLMPKLEILAGCLS
AEPAQIEKQIKSLLDKRVIGITNYYIGEEGVVKQGYDFEPLVFELSEVWALNQKKELDNISEQLNNPGGRLKRVEEDPGF
VLSSQEQDLCQAFENEFGRLLSPMEIEQIIAWLEDHETELILEALRQAVIRGKHNFKYIGSILREWYKNNIRTIKEVESY
QRQFEQNRLKQQLPRKTGSGSESNNRADLKKKTLMRSMYS

Sequences:

>Translated_280_residues
MSQNNRRALKKEFDATNMTVYFGSAIFSGGITGIPNLFLKYYRDVGITDSEMMLVIQLLRLRNEENMLMPKLEILAGCLS
AEPAQIEKQIKSLLDKRVIGITNYYIGEEGVVKQGYDFEPLVFELSEVWALNQKKELDNISEQLNNPGGRLKRVEEDPGF
VLSSQEQDLCQAFENEFGRLLSPMEIEQIIAWLEDHETELILEALRQAVIRGKHNFKYIGSILREWYKNNIRTIKEVESY
QRQFEQNRLKQQLPRKTGSGSESNNRADLKKKTLMRSMYS
>Mature_279_residues
SQNNRRALKKEFDATNMTVYFGSAIFSGGITGIPNLFLKYYRDVGITDSEMMLVIQLLRLRNEENMLMPKLEILAGCLSA
EPAQIEKQIKSLLDKRVIGITNYYIGEEGVVKQGYDFEPLVFELSEVWALNQKKELDNISEQLNNPGGRLKRVEEDPGFV
LSSQEQDLCQAFENEFGRLLSPMEIEQIIAWLEDHETELILEALRQAVIRGKHNFKYIGSILREWYKNNIRTIKEVESYQ
RQFEQNRLKQQLPRKTGSGSESNNRADLKKKTLMRSMYS

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 32442; Mature: 32310

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNNRRALKKEFDATNMTVYFGSAIFSGGITGIPNLFLKYYRDVGITDSEMMLVIQLLR
CCCCHHHHHHHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRNEENMLMPKLEILAGCLSAEPAQIEKQIKSLLDKRVIGITNYYIGEEGVVKQGYDFEP
HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCH
LVFELSEVWALNQKKELDNISEQLNNPGGRLKRVEEDPGFVLSSQEQDLCQAFENEFGRL
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCCCCEECCCHHHHHHHHHHHHHHH
LSPMEIEQIIAWLEDHETELILEALRQAVIRGKHNFKYIGSILREWYKNNIRTIKEVESY
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRQFEQNRLKQQLPRKTGSGSESNNRADLKKKTLMRSMYS
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQNNRRALKKEFDATNMTVYFGSAIFSGGITGIPNLFLKYYRDVGITDSEMMLVIQLLR
CCCHHHHHHHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRNEENMLMPKLEILAGCLSAEPAQIEKQIKSLLDKRVIGITNYYIGEEGVVKQGYDFEP
HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCH
LVFELSEVWALNQKKELDNISEQLNNPGGRLKRVEEDPGFVLSSQEQDLCQAFENEFGRL
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCCCCEECCCHHHHHHHHHHHHHHH
LSPMEIEQIIAWLEDHETELILEALRQAVIRGKHNFKYIGSILREWYKNNIRTIKEVESY
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRQFEQNRLKQQLPRKTGSGSESNNRADLKKKTLMRSMYS
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]