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The map label for this gene is ylbH [H]

Identifier: 134299931

GI number: 134299931

Start: 2281604

End: 2282158

Strand: Reverse

Name: ylbH [H]

Synonym: Dred_2085

Alternate gene names: 134299931

Gene position: 2282158-2281604 (Counterclockwise)

Preceding gene: 134299933

Following gene: 134299930

Centisome position: 63.25

GC content: 43.42

Gene sequence:

>555_bases
TTGCGTATTATTGCTGGGACTGCCAGGGGACGAAAATTAAAAAGTCCAAAGGGAATGACCACGCGTCCTACATCAGATAG
GGTAAGAGAGGCTCTTTTTAATATTCTTTCTTCCTATGTACCGGGCAGTCGTTTCCTAGATTTATTTAGCGGTACGGGAG
CTGTTGCCATTGAAGCCTTGAGCCGTGGTGCAGAGAAAGCCACTTTAGTGGAAAGGGATAAGAATACCGCTAGAATTATT
TATGACAACCTAAGAATGTGTAATGTACTTGATAAGGCGGAGGTACTAACGGTTGATGTAAGCCAGGCCACCCTAATAAT
GAGAAGGAAAAAGGAAACCTTTGATTTGATTTTTATTGATCCTCCCTATAAAAAAGGCTTTGAAGTACCTACGCTAGAAA
AAATTCAAGAGTGTCATCTGCTTAGCAGTGATGGGATATTGGTGGTGGAAAGTGACCAAAAGGACCTGCCGCCGGATCTA
GTGGGAAATCTAACCGCAACTCGAAGAGAACGGTATGGCGATACAGCGTTGACATTCTATAGGCTTCCCAGTTGA

Upstream 100 bases:

>100_bases
AAAGTTGTCTCAATTGTAAAAAAATCGATTTTTTTTACATGGTGTGCTATAATAGTGTGTGTTAAGGTAGCAAGAGACCA
TAAGAAAGGAAATCTCAGTA

Downstream 100 bases:

>100_bases
GGAGGAATATGGATGCGTATAGGAGTTTACCCCGGTAGTTTTGACCCAGTTACCAATGGACACATGGATATCGTAGAACG
ATCTGTGGGACTTTTTGATC

Product: putative methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MRIIAGTARGRKLKSPKGMTTRPTSDRVREALFNILSSYVPGSRFLDLFSGTGAVAIEALSRGAEKATLVERDKNTARII
YDNLRMCNVLDKAEVLTVDVSQATLIMRRKKETFDLIFIDPPYKKGFEVPTLEKIQECHLLSSDGILVVESDQKDLPPDL
VGNLTATRRERYGDTALTFYRLPS

Sequences:

>Translated_184_residues
MRIIAGTARGRKLKSPKGMTTRPTSDRVREALFNILSSYVPGSRFLDLFSGTGAVAIEALSRGAEKATLVERDKNTARII
YDNLRMCNVLDKAEVLTVDVSQATLIMRRKKETFDLIFIDPPYKKGFEVPTLEKIQECHLLSSDGILVVESDQKDLPPDL
VGNLTATRRERYGDTALTFYRLPS
>Mature_184_residues
MRIIAGTARGRKLKSPKGMTTRPTSDRVREALFNILSSYVPGSRFLDLFSGTGAVAIEALSRGAEKATLVERDKNTARII
YDNLRMCNVLDKAEVLTVDVSQATLIMRRKKETFDLIFIDPPYKKGFEVPTLEKIQECHLLSSDGILVVESDQKDLPPDL
VGNLTATRRERYGDTALTFYRLPS

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=181, Percent_Identity=34.8066298342541, Blast_Score=113, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20595; Mature: 20595

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIAGTARGRKLKSPKGMTTRPTSDRVREALFNILSSYVPGSRFLDLFSGTGAVAIEAL
CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHH
SRGAEKATLVERDKNTARIIYDNLRMCNVLDKAEVLTVDVSQATLIMRRKKETFDLIFID
HCCCCHHEEECCCCCCEEEEECCCHHHHHCCCCEEEEEECCHHHHHHHHCCCCEEEEEEC
PPYKKGFEVPTLEKIQECHLLSSDGILVVESDQKDLPPDLVGNLTATRRERYGDTALTFY
CCCCCCCCCCHHHHHHHHHEECCCCEEEEECCCCCCCHHHHHCCHHHHHHHCCCCEEEEE
RLPS
ECCC
>Mature Secondary Structure
MRIIAGTARGRKLKSPKGMTTRPTSDRVREALFNILSSYVPGSRFLDLFSGTGAVAIEAL
CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHH
SRGAEKATLVERDKNTARIIYDNLRMCNVLDKAEVLTVDVSQATLIMRRKKETFDLIFID
HCCCCHHEEECCCCCCEEEEECCCHHHHHCCCCEEEEEECCHHHHHHHHCCCCEEEEEEC
PPYKKGFEVPTLEKIQECHLLSSDGILVVESDQKDLPPDLVGNLTATRRERYGDTALTFY
CCCCCCCCCCHHHHHHHHHEECCCCEEEEECCCCCCCHHHHHCCHHHHHHHCCCCEEEEE
RLPS
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]