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The map label for this gene is rimM

Identifier: 134299898

GI number: 134299898

Start: 2249545

End: 2250054

Strand: Reverse

Name: rimM

Synonym: Dred_2052

Alternate gene names: 134299898

Gene position: 2250054-2249545 (Counterclockwise)

Preceding gene: 134299899

Following gene: 134299897

Centisome position: 62.36

GC content: 38.24

Gene sequence:

>510_bases
TTGTCAGAAGAGTACATAACCGTTGGAAAAGTTGTGAACACCCAGGGAATCCAGGGGGAGGTAAGGATCATTCCTACCAC
GGATTTTCCGGAACGATTTGTAAAAAATGATAAGATATCTGTTCTGCTCCGGGGTCAACGCAGGGATTATACCATTGAAA
GAGTTTGGGAACACAAACAATTTATAATTATAAAATTTTCTGAAATTCCAGATATGACAGCCGCCGAAAAACTAAAGGGT
GGACTACTACAAGTTACTATGGAGGAATTAGTTCCGCTGCCCGAAGGCAATTATTATATCTTTCAGATTGTTGGATTAAA
AGTTGTTGATGAAAACGAACAGGAATTGGGAACCGTAGCCCAGGTATTACAAACCGGAGCCAACGATGTTTATGTGGTGA
AAAGAAGTGAAGGAAAAGATATTTTAATTCCCGCCATTAAATCCGTTGTTAAGGAAATTAATATTACCGAAGGAAAAATG
AAAGTCGAACTACTGGAAGGATTAATATAA

Upstream 100 bases:

>100_bases
ACAAGTGGGAGATGACTGGAACCAATTGATGAATGCCGAAATTATTCTTGAAGACGGAAAAGTGGTAGAAATTCGTGCTT
TACATCCGGAGGGATAACAA

Downstream 100 bases:

>100_bases
ATAGGGTGAAAACATGAGAATAGATATTCTGACACTTTTTCCTGAGATGTTTCAAGGACCGTTCAACCACAGTATTCTCA
AGAGGGCCCAGGAAAACAAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSEEYITVGKVVNTQGIQGEVRIIPTTDFPERFVKNDKISVLLRGQRRDYTIERVWEHKQFIIIKFSEIPDMTAAEKLKG
GLLQVTMEELVPLPEGNYYIFQIVGLKVVDENEQELGTVAQVLQTGANDVYVVKRSEGKDILIPAIKSVVKEINITEGKM
KVELLEGLI

Sequences:

>Translated_169_residues
MSEEYITVGKVVNTQGIQGEVRIIPTTDFPERFVKNDKISVLLRGQRRDYTIERVWEHKQFIIIKFSEIPDMTAAEKLKG
GLLQVTMEELVPLPEGNYYIFQIVGLKVVDENEQELGTVAQVLQTGANDVYVVKRSEGKDILIPAIKSVVKEINITEGKM
KVELLEGLI
>Mature_168_residues
SEEYITVGKVVNTQGIQGEVRIIPTTDFPERFVKNDKISVLLRGQRRDYTIERVWEHKQFIIIKFSEIPDMTAAEKLKGG
LLQVTMEELVPLPEGNYYIFQIVGLKVVDENEQELGTVAQVLQTGANDVYVVKRSEGKDILIPAIKSVVKEINITEGKMK
VELLEGLI

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=169, Percent_Identity=28.9940828402367, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_DESRM (A4J666)

Other databases:

- EMBL:   CP000612
- RefSeq:   YP_001113394.1
- ProteinModelPortal:   A4J666
- SMR:   A4J666
- STRING:   A4J666
- GeneID:   4958396
- GenomeReviews:   CP000612_GR
- KEGG:   drm:Dred_2052
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   NDVYWIK
- PhylomeDB:   A4J666
- ProtClustDB:   CLSK853630
- BioCyc:   DRED349161:DRED_2052-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19133; Mature: 19001

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEYITVGKVVNTQGIQGEVRIIPTTDFPERFVKNDKISVLLRGQRRDYTIERVWEHKQ
CCCCEEEECEEEECCCCCCEEEEEECCCCHHHHHCCCCEEEEEECCCCCCHHHHHHCCCE
FIIIKFSEIPDMTAAEKLKGGLLQVTMEELVPLPEGNYYIFQIVGLKVVDENEQELGTVA
EEEEEECCCCCCHHHHHHCCCCEEEEHHHHCCCCCCCEEEEEEEEEEEECCCHHHHHHHH
QVLQTGANDVYVVKRSEGKDILIPAIKSVVKEINITEGKMKVELLEGLI
HHHHCCCCEEEEEEECCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SEEYITVGKVVNTQGIQGEVRIIPTTDFPERFVKNDKISVLLRGQRRDYTIERVWEHKQ
CCCEEEECEEEECCCCCCEEEEEECCCCHHHHHCCCCEEEEEECCCCCCHHHHHHCCCE
FIIIKFSEIPDMTAAEKLKGGLLQVTMEELVPLPEGNYYIFQIVGLKVVDENEQELGTVA
EEEEEECCCCCCHHHHHHCCCCEEEEHHHHCCCCCCCEEEEEEEEEEEECCCHHHHHHHH
QVLQTGANDVYVVKRSEGKDILIPAIKSVVKEINITEGKMKVELLEGLI
HHHHCCCCEEEEEEECCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA