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The map label for this gene is rbfA

Identifier: 134299803

GI number: 134299803

Start: 2146539

End: 2146901

Strand: Reverse

Name: rbfA

Synonym: Dred_1956

Alternate gene names: 134299803

Gene position: 2146901-2146539 (Counterclockwise)

Preceding gene: 134299804

Following gene: 134299802

Centisome position: 59.5

GC content: 38.84

Gene sequence:

>363_bases
ATGTCGCACCGACCGGAACGTGTAGCTGAGGCTATAAAAAAAGAAGTAGCAGATTTAATCAGAAATGACATAAAGGATCC
AAGAATAGGTTTTGTGACAATAACAGGTGTCGAGGTTACTCGAGATCTATCCTTTGCTAAAATCTTTATTAGTGTTATGG
GTTCCGATGCTCACCGGCAAGAAACATTGAGTATACTTCAAAAATCCGCTGGTTACATGCGTTCTGAAATTGGAAGAAGG
ATTAAGCTTCGTCATGCCCCAGAATTAATATTTAAATTAGATACTTCACTGGATCACGGAACTCGAATAGCTGAAATTCT
TCATGAGATAAACTCTCAGGAGGCAAAGCCAACTCATGAATAA

Upstream 100 bases:

>100_bases
CTTTAATGATGTGCAGGAAGGTGACATTATTGAAGCATTTACAATGGAAGCGATCAAACGGGAGATTTAAGAACTACCAA
ACAACAGGAGGTGTGTTAGC

Downstream 100 bases:

>100_bases
CTTGAGGACAGTGGCAGATGTGCTGGAGAAGTCAAGTAGACCCTTGCTGTGTGGTCATATTATGCCAGATGGTGATAGCC
TTGGCTCTGTCCTAGCGTTA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSHRPERVAEAIKKEVADLIRNDIKDPRIGFVTITGVEVTRDLSFAKIFISVMGSDAHRQETLSILQKSAGYMRSEIGRR
IKLRHAPELIFKLDTSLDHGTRIAEILHEINSQEAKPTHE

Sequences:

>Translated_120_residues
MSHRPERVAEAIKKEVADLIRNDIKDPRIGFVTITGVEVTRDLSFAKIFISVMGSDAHRQETLSILQKSAGYMRSEIGRR
IKLRHAPELIFKLDTSLDHGTRIAEILHEINSQEAKPTHE
>Mature_119_residues
SHRPERVAEAIKKEVADLIRNDIKDPRIGFVTITGVEVTRDLSFAKIFISVMGSDAHRQETLSILQKSAGYMRSEIGRRI
KLRHAPELIFKLDTSLDHGTRIAEILHEINSQEAKPTHE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=111, Percent_Identity=37.8378378378378, Blast_Score=89, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_DESRM (A4J5X1)

Other databases:

- EMBL:   CP000612
- RefSeq:   YP_001113299.1
- ProteinModelPortal:   A4J5X1
- SMR:   A4J5X1
- STRING:   A4J5X1
- GeneID:   4955657
- GenomeReviews:   CP000612_GR
- KEGG:   drm:Dred_1956
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   A4J5X1
- BioCyc:   DRED349161:DRED_1956-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13628; Mature: 13497

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHRPERVAEAIKKEVADLIRNDIKDPRIGFVTITGVEVTRDLSFAKIFISVMGSDAHRQ
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHH
ETLSILQKSAGYMRSEIGRRIKLRHAPELIFKLDTSLDHGTRIAEILHEINSQEAKPTHE
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SHRPERVAEAIKKEVADLIRNDIKDPRIGFVTITGVEVTRDLSFAKIFISVMGSDAHRQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHH
ETLSILQKSAGYMRSEIGRRIKLRHAPELIFKLDTSLDHGTRIAEILHEINSQEAKPTHE
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA