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The map label for this gene is hybB [C]

Identifier: 134298336

GI number: 134298336

Start: 503264

End: 504409

Strand: Reverse

Name: hybB [C]

Synonym: Dred_0461

Alternate gene names: 134298336

Gene position: 504409-503264 (Counterclockwise)

Preceding gene: 134298337

Following gene: 134298332

Centisome position: 13.98

GC content: 44.5

Gene sequence:

>1146_bases
ATGGCGTCTCACGCCCAAGCCCAAAAGTGGAGTTTTAAAATGACTCCCACACGCGTATTATTAATGCTGTTATCGGCTGT
CGCCGTAGGCGTAATCGTCTTCCGTCTGGTAACCGGCCTTGGCATGGTTACAAATCTGAGCGATGAATGGCCCTGGGGTC
TTTGGATCGGTTTCGACGTCCTTTGCGGTGTTGCATTGGCCGGTGGTGGTTATGGTACTGCACTTATCGTACACGTTCTG
CATAAGGAATATTTCCACCCCATCGCCCGTAGTGCTATGTTAACATCCTTAATTGGTTACCTGTTGGTAATGGCTGGTCT
GTTCCTTGATATCGGCCAGTGGTTTAACTTCTGGCGTCCATTCGTATCCTGGGGTCACTCCTCGGTACTGTTTGAAGTTT
TCTGGTGTGTTTCCTGTTACACCACTGTACAAATTCTGGAATTTGGTGAAATTGCCACCGAACGGATCGGTACTCAATTC
CATAGTATTTTCAAAAAGGCTCTGCCTGTATTGATGATTATTGGTATTATTTTCCCCACCCTGCACCAGTCTTCTCTGGG
TGGTCTGTACCTGCTGATGGTTGATAAGCTATATCCCCTGTGGTGGTCTCCTATTATCTTCTTCTTTTTCTTGCTGTCCT
CTTTCTTTGTAGGACCTGCAATGATCTGTGTGGAAACTACTCTGGCCGGAAAGGCTTATGATCACTGGGTACCTATTCCG
GTTTTACAGAAGCTAATCCGTATTTCTGGCTTTGTTATGATTTTTTATCTGTTATTAAAAATCTATGATTTAGTAAGTCG
TGGCGTATTTGGACTGATGTTCTCCGGAACCTTTGAAGCCAACATGTTCTTAATCGAAATGATTTTCGGTATAATTGTGC
CCATCATTATTTGCTTCAGCGGCTTTAGCGCAACCCGTAAGGGTCTATTTACCTTCGGTTTACTGGTAAGCTGTGGTGTT
GTTCTAAACCGTATGAACGTTGTTGTGATTGGTATGATTCGCTCAACCGGTGTATCCTATGTTCCTTCTATCTGGGAGTT
CATTGTTAGTGCCGGTTTGGTTGCAATGGGTGTGCTGGCATACTGCTTTATCGTAGAAAACTTCAAAATTCTAGAACACG
ATGATCATCACGGTCAAGCTGCCTAA

Upstream 100 bases:

>100_bases
TACCATTACACAAAGCGTCGCAACCAAATTTCAAAAGACAATAACAAAAATATTAAGGCCTAATACAATTCAACTATTTC
TGAGAACTGGGGGGATATAC

Downstream 100 bases:

>100_bases
TATTAAATAACACTACCGCTAGGTAGAAGGGCGGAGGCTCGTCGAGACCCCCGCCCTTCTTTTTTAATAAGTTAAAAATT
GCGCCTGTATTGTTTTTTTG

Product: putative hydrogenase cytochrome b subunit

Products: NA

Alternate protein names: HMC operon ORF 3 [H]

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MASHAQAQKWSFKMTPTRVLLMLLSAVAVGVIVFRLVTGLGMVTNLSDEWPWGLWIGFDVLCGVALAGGGYGTALIVHVL
HKEYFHPIARSAMLTSLIGYLLVMAGLFLDIGQWFNFWRPFVSWGHSSVLFEVFWCVSCYTTVQILEFGEIATERIGTQF
HSIFKKALPVLMIIGIIFPTLHQSSLGGLYLLMVDKLYPLWWSPIIFFFFLLSSFFVGPAMICVETTLAGKAYDHWVPIP
VLQKLIRISGFVMIFYLLLKIYDLVSRGVFGLMFSGTFEANMFLIEMIFGIIVPIIICFSGFSATRKGLFTFGLLVSCGV
VLNRMNVVVIGMIRSTGVSYVPSIWEFIVSAGLVAMGVLAYCFIVENFKILEHDDHHGQAA

Sequences:

>Translated_381_residues
MASHAQAQKWSFKMTPTRVLLMLLSAVAVGVIVFRLVTGLGMVTNLSDEWPWGLWIGFDVLCGVALAGGGYGTALIVHVL
HKEYFHPIARSAMLTSLIGYLLVMAGLFLDIGQWFNFWRPFVSWGHSSVLFEVFWCVSCYTTVQILEFGEIATERIGTQF
HSIFKKALPVLMIIGIIFPTLHQSSLGGLYLLMVDKLYPLWWSPIIFFFFLLSSFFVGPAMICVETTLAGKAYDHWVPIP
VLQKLIRISGFVMIFYLLLKIYDLVSRGVFGLMFSGTFEANMFLIEMIFGIIVPIIICFSGFSATRKGLFTFGLLVSCGV
VLNRMNVVVIGMIRSTGVSYVPSIWEFIVSAGLVAMGVLAYCFIVENFKILEHDDHHGQAA
>Mature_380_residues
ASHAQAQKWSFKMTPTRVLLMLLSAVAVGVIVFRLVTGLGMVTNLSDEWPWGLWIGFDVLCGVALAGGGYGTALIVHVLH
KEYFHPIARSAMLTSLIGYLLVMAGLFLDIGQWFNFWRPFVSWGHSSVLFEVFWCVSCYTTVQILEFGEIATERIGTQFH
SIFKKALPVLMIIGIIFPTLHQSSLGGLYLLMVDKLYPLWWSPIIFFFFLLSSFFVGPAMICVETTLAGKAYDHWVPIPV
LQKLIRISGFVMIFYLLLKIYDLVSRGVFGLMFSGTFEANMFLIEMIFGIIVPIIICFSGFSATRKGLFTFGLLVSCGVV
LNRMNVVVIGMIRSTGVSYVPSIWEFIVSAGLVAMGVLAYCFIVENFKILEHDDHHGQAA

Specific function: HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=364, Percent_Identity=31.043956043956, Blast_Score=155, Evalue=4e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 42555; Mature: 42424

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCEECCCCCCCCCC
>Mature Secondary Structure 
ASHAQAQKWSFKMTPTRVLLMLLSAVAVGVIVFRLVTGLGMVTNLSDEWPWGLWIGFDV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH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HHHHHHCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8335628 [H]