Click here to switch to the map view.

The map label for this gene is ykgF [H]

Identifier: 134298307

GI number: 134298307

Start: 472972

End: 474000

Strand: Reverse

Name: ykgF [H]

Synonym: Dred_0432

Alternate gene names: 134298307

Gene position: 474000-472972 (Counterclockwise)

Preceding gene: 134298308

Following gene: 134298306

Centisome position: 13.14

GC content: 41.69

Gene sequence:

>1029_bases
ATGAATACCACGGCGAAAGCAGAAAAAATATTAGGGCAAATTCAAGCACAGCGGGAAACCTTGCTCGCCGACTATTCCAC
CCTAGCACAGAAAGTTCAAAATTTAAAATCTTCAACGGCTAGAGAGCTTAACAAAATGGTTGGTCGTGCCACTACAATGC
TTAAGGTTAAGGGATGTCAAGTTTTCCTGGCTAAAGATCCATCGGAAGCCCGGGAACAGGTTCTTAAAATTTTATCTACC
AACCAAAAAGCACTCATAAGTAAAGACCCAATTTTTACAGAGATTAATTTACACCAGTTTCTGCAAGAAAAAAATGTGAA
GCTTGTTCAAACAGATTTAGGAGAAAGGGTAGCCCCTTTGTCTATCGATGTACATCCCAGAATGGCCTCCATTAATACAT
CGGTTATGGACAAAGAGCACCTTTTGCAACTAAAGAATGATATACGGGAAGAATCTTCCCAAACTGATTTTGGCATCACG
GGCGCAGACGCTATCATTGCTGAGACCGGCACCATTGCTCTGTTGGAGTCCGAAGGCAATGTCCGTCTAACCTCCAACCT
ACCCTATAATCATATCGTTATTGCGGGTGTTGAGAAAATCGTCCCCACTTTGGAAGATGCACTGACTGTATGTCGGACTT
CAAGTATATATGGTTTAGGTAAGGACTTACTTAATTATATTTCCTTTATTTCAGGTCCCAGCAGAACCGCCGACATCGAA
TTCCGTATGGTACAAGGTATGCATGGCCCTAAAGAAGTCTATGTGATCTTAGTAGATAACGGACGTATGGCAGCATCGAA
AAAGGGAGAATTTGACGCTCTAAAATGTCTGCATTGTGGTGGTTGTCTGGTCGACTGTCCTGCCTATTTAAAAAAAGGGC
TAAAATTTGGTTATCACTATTCAGGTAAGCGAAAAGCCATATTGTCAAAGTTTTTAAGTGGCGAATCGAGCCCCTATCAA
GAAGAATGTACTTACTGCTTAGACTGTGAAAAATGCAATACCATCTGCCCGGTGGGCCTAAAAATTTAA

Upstream 100 bases:

>100_bases
TGTTGCATTTTCGGGATGGCATAACCCAAAAGAATATGAAGCAGCAGGTTTTTCATACAATACAACTACTTAGTCAAACA
TATGGCAGGAGGAATAAGGA

Downstream 100 bases:

>100_bases
GACATTGAAATGAGGGTTTTTTATGTCACAAAAGTCCACGAACATGCGCTGGATCTTGGGTTTTTCCCTATTTTTAATTG
GTTTTGTTGCATATATGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MNTTAKAEKILGQIQAQRETLLADYSTLAQKVQNLKSSTARELNKMVGRATTMLKVKGCQVFLAKDPSEAREQVLKILST
NQKALISKDPIFTEINLHQFLQEKNVKLVQTDLGERVAPLSIDVHPRMASINTSVMDKEHLLQLKNDIREESSQTDFGIT
GADAIIAETGTIALLESEGNVRLTSNLPYNHIVIAGVEKIVPTLEDALTVCRTSSIYGLGKDLLNYISFISGPSRTADIE
FRMVQGMHGPKEVYVILVDNGRMAASKKGEFDALKCLHCGGCLVDCPAYLKKGLKFGYHYSGKRKAILSKFLSGESSPYQ
EECTYCLDCEKCNTICPVGLKI

Sequences:

>Translated_342_residues
MNTTAKAEKILGQIQAQRETLLADYSTLAQKVQNLKSSTARELNKMVGRATTMLKVKGCQVFLAKDPSEAREQVLKILST
NQKALISKDPIFTEINLHQFLQEKNVKLVQTDLGERVAPLSIDVHPRMASINTSVMDKEHLLQLKNDIREESSQTDFGIT
GADAIIAETGTIALLESEGNVRLTSNLPYNHIVIAGVEKIVPTLEDALTVCRTSSIYGLGKDLLNYISFISGPSRTADIE
FRMVQGMHGPKEVYVILVDNGRMAASKKGEFDALKCLHCGGCLVDCPAYLKKGLKFGYHYSGKRKAILSKFLSGESSPYQ
EECTYCLDCEKCNTICPVGLKI
>Mature_342_residues
MNTTAKAEKILGQIQAQRETLLADYSTLAQKVQNLKSSTARELNKMVGRATTMLKVKGCQVFLAKDPSEAREQVLKILST
NQKALISKDPIFTEINLHQFLQEKNVKLVQTDLGERVAPLSIDVHPRMASINTSVMDKEHLLQLKNDIREESSQTDFGIT
GADAIIAETGTIALLESEGNVRLTSNLPYNHIVIAGVEKIVPTLEDALTVCRTSSIYGLGKDLLNYISFISGPSRTADIE
FRMVQGMHGPKEVYVILVDNGRMAASKKGEFDALKCLHCGGCLVDCPAYLKKGLKFGYHYSGKRKAILSKFLSGESSPYQ
EECTYCLDCEKCNTICPVGLKI

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=362, Percent_Identity=24.3093922651934, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 37695; Mature: 37695

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTAKAEKILGQIQAQRETLLADYSTLAQKVQNLKSSTARELNKMVGRATTMLKVKGCQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCE
VFLAKDPSEAREQVLKILSTNQKALISKDPIFTEINLHQFLQEKNVKLVQTDLGERVAPL
EEEECCHHHHHHHHHHHHCCCCHHEECCCCCEEECCHHHHHHHCCCEEEEECCCCCCCCE
SIDVHPRMASINTSVMDKEHLLQLKNDIREESSQTDFGITGADAIIAETGTIALLESEGN
EEECCCCHHHCCHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCC
VRLTSNLPYNHIVIAGVEKIVPTLEDALTVCRTSSIYGLGKDLLNYISFISGPSRTADIE
EEEECCCCCCEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEE
FRMVQGMHGPKEVYVILVDNGRMAASKKGEFDALKCLHCGGCLVDCPAYLKKGLKFGYHY
EEEECCCCCCCEEEEEEECCCCEECCCCCCHHHHHHHHCCCCEEECHHHHHHHHHCCCCC
SGKRKAILSKFLSGESSPYQEECTYCLDCEKCNTICPVGLKI
CCCHHHHHHHHHCCCCCCCHHHCCEEECHHHCCCCCCCCCCC
>Mature Secondary Structure
MNTTAKAEKILGQIQAQRETLLADYSTLAQKVQNLKSSTARELNKMVGRATTMLKVKGCQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCE
VFLAKDPSEAREQVLKILSTNQKALISKDPIFTEINLHQFLQEKNVKLVQTDLGERVAPL
EEEECCHHHHHHHHHHHHCCCCHHEECCCCCEEECCHHHHHHHCCCEEEEECCCCCCCCE
SIDVHPRMASINTSVMDKEHLLQLKNDIREESSQTDFGITGADAIIAETGTIALLESEGN
EEECCCCHHHCCHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCC
VRLTSNLPYNHIVIAGVEKIVPTLEDALTVCRTSSIYGLGKDLLNYISFISGPSRTADIE
EEEECCCCCCEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEE
FRMVQGMHGPKEVYVILVDNGRMAASKKGEFDALKCLHCGGCLVDCPAYLKKGLKFGYHY
EEEECCCCCCCEEEEEEECCCCEECCCCCCHHHHHHHHCCCCEEECHHHHHHHHHCCCCC
SGKRKAILSKFLSGESSPYQEECTYCLDCEKCNTICPVGLKI
CCCHHHHHHHHHCCCCCCCHHHCCEEECHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]