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The map label for this gene is recF [H]

Identifier: 126697102

GI number: 126697102

Start: 1485558

End: 1486355

Strand: Reverse

Name: recF [H]

Synonym: P9301_17641

Alternate gene names: 126697102

Gene position: 1486355-1485558 (Counterclockwise)

Preceding gene: 126697103

Following gene: 126697101

Centisome position: 90.53

GC content: 30.45

Gene sequence:

>798_bases
TTGAAAAAACAAAGTGAAATAAAGAACTATATCCGAAGTGTATGTTTCTGTTCTAATGATATAGATATCGTTAGAAGTGA
GCCCAGTTATCGAAGAACGTGGATTGATAAAGTCGTATCTCAGCTTGAACCAGTATATTTAGACCTGATAAGTAGATTTA
ACAGGCTTTTAAAACAAAGAAGTCATTTTTGGCGTTCAGAAAGTTTCTTAAAAACCCAATCCACAGATATTGTTGAAAGC
TTTGATATTCAAATGTCAATAATTAGTACAAGAATTTTTAGGCGTAGAAGAAGAGCTTTATTAAAAATAAAACCATATGT
TGAATATTGGCATAATCATCTAAGCAAATCTCAAGAGCAAATAGACATAAATTATCTTTCGGGGATACAAAATATAAGTC
CAGAAGAAGAAGAAGAAGAAGTTATTAGTAAAAAAATAGCAGATCAACTCTTAAATCAGCGTTCAATAGAAGCATTGACT
GGTAAATGTAATTTTGGACCACATCGTGATGATATTGAGTTTCTAATCAATAATGTTTCAGTTAGAAAATATGGTTCCTC
AGGACAGCAAAGGACTTTTATCTTGGCTTTAAAGATGGCTGAACTCGATTTATTGAATAAAACATTAAATATTCCTCCAA
TACTGATATTGGACGATGTCTTAGCTGAATTAGATTTAACTAGGCAAAATTTGTTATTAAATTCTGTTGGTAAAGATAGT
CAATGTTTTATAAGTGCGACACATTTAGATAAATTCAATCAGTCTTTCATAGGCTCTTCACAAATGATTCATTTATAA

Upstream 100 bases:

>100_bases
TGATCTGGCTGTAGTTATAGGACAGATAAATTTTAAAGACGATTTAAAGTTAAATTTATTCCGAAAAGGCCCTAAAAGAA
TTTATGTAAATGAATCAATC

Downstream 100 bases:

>100_bases
TTTTTAAAAGGCATTATTTTTAGCTAATCTTAATTTCATATAAATTTCTTAAATGGAAATCTACAAAAAAAGTCAAATTT
TAAGTTCGTTAAGTAATGAG

Product: putative DNA repair and genetic recombination protein RecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYLDLISRFNRLLKQRSHFWRSESFLKTQSTDIVES
FDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSQEQIDINYLSGIQNISPEEEEEEVISKKIADQLLNQRSIEALT
GKCNFGPHRDDIEFLINNVSVRKYGSSGQQRTFILALKMAELDLLNKTLNIPPILILDDVLAELDLTRQNLLLNSVGKDS
QCFISATHLDKFNQSFIGSSQMIHL

Sequences:

>Translated_265_residues
MKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYLDLISRFNRLLKQRSHFWRSESFLKTQSTDIVES
FDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSQEQIDINYLSGIQNISPEEEEEEVISKKIADQLLNQRSIEALT
GKCNFGPHRDDIEFLINNVSVRKYGSSGQQRTFILALKMAELDLLNKTLNIPPILILDDVLAELDLTRQNLLLNSVGKDS
QCFISATHLDKFNQSFIGSSQMIHL
>Mature_265_residues
MKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYLDLISRFNRLLKQRSHFWRSESFLKTQSTDIVES
FDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSQEQIDINYLSGIQNISPEEEEEEVISKKIADQLLNQRSIEALT
GKCNFGPHRDDIEFLINNVSVRKYGSSGQQRTFILALKMAELDLLNKTLNIPPILILDDVLAELDLTRQNLLLNSVGKDS
QCFISATHLDKFNQSFIGSSQMIHL

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001238
- InterPro:   IPR018078 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30955; Mature: 30955

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS00617 RECF_1 ; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYLDLISRFNRLLKQR
CCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHFWRSESFLKTQSTDIVESFDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSQEQ
HHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IDINYLSGIQNISPEEEEEEVISKKIADQLLNQRSIEALTGKCNFGPHRDDIEFLINNVS
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
VRKYGSSGQQRTFILALKMAELDLLNKTLNIPPILILDDVLAELDLTRQNLLLNSVGKDS
EEECCCCCCCEEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
QCFISATHLDKFNQSFIGSSQMIHL
CEEEEHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure
MKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYLDLISRFNRLLKQR
CCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHFWRSESFLKTQSTDIVESFDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSQEQ
HHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IDINYLSGIQNISPEEEEEEVISKKIADQLLNQRSIEALTGKCNFGPHRDDIEFLINNVS
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
VRKYGSSGQQRTFILALKMAELDLLNKTLNIPPILILDDVLAELDLTRQNLLLNSVGKDS
EEECCCCCCCEEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
QCFISATHLDKFNQSFIGSSQMIHL
CEEEEHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917641 [H]