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The map label for this gene is tatD [C]

Identifier: 126697015

GI number: 126697015

Start: 1409501

End: 1410295

Strand: Reverse

Name: tatD [C]

Synonym: P9301_16771

Alternate gene names: 126697015

Gene position: 1410295-1409501 (Counterclockwise)

Preceding gene: 126697016

Following gene: 126697014

Centisome position: 85.9

GC content: 31.82

Gene sequence:

>795_bases
ATGAGCAACATAGAACTCATAGATTCTCACTGTCACTTAATATTTGAAAATTTTGAAAGAGATCTTGAAGATGTTGTTTC
AAGGTTGCGTTCAAAAGGTATTAAAAAATTAGTTCATGCTTGTTGTGAATTAACAGAAATTCCTAAGTTGAAAAAAATAT
CTCATGAATTTAATGAAATTTACTATTCAGTTGGATTACATCCTCTAGAAGCAAAAAAATGGGAACAAAGTTCAAAATCT
CTTCTAAGAAAATCAGCTCTAGAAGATAGAAGAGTTGTAGCTATTGGCGAATTAGGTTTGGATTTTTTCAAAAATGAAAA
TAAAACTCAGCAAATTGAAGCACTGATTCCGCAAATGGAGTTAGCCTATGAACTTAAATTGCCTGTAATTATCCATTGTA
GAGATGCTGCAAATGAAATGATTGAGATATGTAGTGATCTCTCTAATAAAGGGAAATGTCCTGATGGTGTACTTCATTGT
TGGACAGGAACTCCAAATGAAATGAAGCAATTCTTGGATCTTGGTTTTTACATAAGTTTTAGCGGAATAGTGACTTTCCC
AAAAGCACATGAAATTCATGAATGTGCCAAAATAGTACCAAATGATAAATACTTAATCGAAACTGATTCACCATTCTTGG
CTCCTGTCCCTCATAGAGGTAAAAGAAATGAACCTGCATTTGTTGAAAATGTTGCAAAATTTATGGCAGATTTAAGATCT
ACTGAATTAAACACAATTGCTAAAGAGTCATCTAAGAATGCTGAAGATTTGTTTAAATTTGACTTGTTAATTTGA

Upstream 100 bases:

>100_bases
AAAATGTTCTTCACAAGAATAATGGAGCTAATAGAAAATCAAAAATTAACAATTTTGTAAAAACTACGCTAACCACAAAG
TAAAAAGGCATATCAGAATT

Downstream 100 bases:

>100_bases
CAGAGCAGCTGTTAATATAAGGAATTACTGGAAATTTTTCTTAATTTTTAGCTTTTAACTTACACAGTTAATGATTTGTC
AGCATTAAACAAAATTTAAT

Product: TatD family deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSNIELIDSHCHLIFENFERDLEDVVSRLRSKGIKKLVHACCELTEIPKLKKISHEFNEIYYSVGLHPLEAKKWEQSSKS
LLRKSALEDRRVVAIGELGLDFFKNENKTQQIEALIPQMELAYELKLPVIIHCRDAANEMIEICSDLSNKGKCPDGVLHC
WTGTPNEMKQFLDLGFYISFSGIVTFPKAHEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVAKFMADLRS
TELNTIAKESSKNAEDLFKFDLLI

Sequences:

>Translated_264_residues
MSNIELIDSHCHLIFENFERDLEDVVSRLRSKGIKKLVHACCELTEIPKLKKISHEFNEIYYSVGLHPLEAKKWEQSSKS
LLRKSALEDRRVVAIGELGLDFFKNENKTQQIEALIPQMELAYELKLPVIIHCRDAANEMIEICSDLSNKGKCPDGVLHC
WTGTPNEMKQFLDLGFYISFSGIVTFPKAHEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVAKFMADLRS
TELNTIAKESSKNAEDLFKFDLLI
>Mature_263_residues
SNIELIDSHCHLIFENFERDLEDVVSRLRSKGIKKLVHACCELTEIPKLKKISHEFNEIYYSVGLHPLEAKKWEQSSKSL
LRKSALEDRRVVAIGELGLDFFKNENKTQQIEALIPQMELAYELKLPVIIHCRDAANEMIEICSDLSNKGKCPDGVLHCW
TGTPNEMKQFLDLGFYISFSGIVTFPKAHEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVAKFMADLRST
ELNTIAKESSKNAEDLFKFDLLI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=270, Percent_Identity=28.1481481481481, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI14042943, Length=288, Percent_Identity=27.0833333333333, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=28.1481481481481, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI226061853, Length=278, Percent_Identity=28.7769784172662, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI226061614, Length=263, Percent_Identity=27.3764258555133, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI225903439, Length=231, Percent_Identity=29.004329004329, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=29.7872340425532, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI225903424, Length=227, Percent_Identity=26.8722466960352, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=39.2307692307692, Blast_Score=187, Evalue=7e-49,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=30.8880308880309, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=28.90625, Blast_Score=120, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17559024, Length=296, Percent_Identity=28.0405405405405, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=266, Percent_Identity=31.203007518797, Blast_Score=118, Evalue=3e-27,
Organism=Drosophila melanogaster, GI221330018, Length=222, Percent_Identity=30.1801801801802, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24586117, Length=222, Percent_Identity=30.1801801801802, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=27.681660899654, Blast_Score=94, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30175; Mature: 30044

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIELIDSHCHLIFENFERDLEDVVSRLRSKGIKKLVHACCELTEIPKLKKISHEFNEI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YYSVGLHPLEAKKWEQSSKSLLRKSALEDRRVVAIGELGLDFFKNENKTQQIEALIPQME
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
LAYELKLPVIIHCRDAANEMIEICSDLSNKGKCPDGVLHCWTGTPNEMKQFLDLGFYISF
HHHEECCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHEEEE
SGIVTFPKAHEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVAKFMADLRS
CCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TELNTIAKESSKNAEDLFKFDLLI
HHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SNIELIDSHCHLIFENFERDLEDVVSRLRSKGIKKLVHACCELTEIPKLKKISHEFNEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YYSVGLHPLEAKKWEQSSKSLLRKSALEDRRVVAIGELGLDFFKNENKTQQIEALIPQME
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
LAYELKLPVIIHCRDAANEMIEICSDLSNKGKCPDGVLHCWTGTPNEMKQFLDLGFYISF
HHHEECCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHEEEE
SGIVTFPKAHEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVAKFMADLRS
CCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TELNTIAKESSKNAEDLFKFDLLI
HHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]