Click here to switch to the map view.

The map label for this gene is yjfH [C]

Identifier: 126696248

GI number: 126696248

Start: 781489

End: 782493

Strand: Direct

Name: yjfH [C]

Synonym: P9301_09101

Alternate gene names: 126696248

Gene position: 781489-782493 (Clockwise)

Preceding gene: 126696247

Following gene: 126696249

Centisome position: 47.6

GC content: 32.54

Gene sequence:

>1005_bases
ATGAAAAACTCCTCAAATAAATTTCGCGGAAGAAATATTAAAGAGTACAAAAAAAATTCAGATTTTAGCTATTACTCAAA
AAATACAAATCGTTCAGAAAAAAATGATAAATTTTTGAACAAGTACGCTAACAATAAGAAAGTAGAAAATTTAAGTAAAA
ATAAAGAATCTAATACTTTTTCGTCTTTTAAAAGAAGAAATACAAAATTTAAATCCAATACAGAATTTTCTAATAAAAAT
TCTGATATCCATCAAGAGTTTACTAACAAAAGAAATTTTGATGATTGGATATGGGGTAAACATTCGGTTTATGAGACTCT
CAGTAGTGATAGAGCTATTAATAGGATTTGGTGTACTTCGGAAATTTTTTCTTCAGATAAATTCTATATTTTGCTTAAGG
ATCTTAAATCAAAAGGAGTTCTTATTGAAGAAGTTTCTTGGAATAGGCTTTCGCAATTGACATGTGGTGCTTCACATCAA
GGTGTTGCATTGCAGTTAGCATGCTCTAAAACAATACCTCTTGAACAATTAATCTATTTTTCTAAACACAATTGTCCAAA
TCCTATAATCGTCGCATTTGATGGTATAACCGATCCTCATAATGTTGGCGCGATAATAAGATCAGCTGAGGCATTTGATT
GCAAGGGTGTAATTATTCCTCAAAGAAGGTCTGCAGGATTGACTGGAACAGTCGCCAAGGTAGCTGCAGGAGCCTTAGAA
CACCTTCATGTAAGTAGAGTTGTCAACTTAAACAGAGCACTTGAGGAACTTAAGAAAAATGGTTTTCTTGTTGTTGGCTT
ATCTGGCGATGGTCAAATATCTATTTCAAATTTTCAAGAAAAAGCACCTTTGGTAGTTGTAGTTGGCTCTGAAGATAAAG
GTATTTCTTTGCTTACTCAAAAAAAATGCGATTATATATTAAGCATTCCTCTTAAAGGCAAGACTTCAAGTTTAAATGCC
TCCGTGGCAGCCGCCATTTCGCTATATCATTTGACAGGTAAATAA

Upstream 100 bases:

>100_bases
GCAACTGGTTTTGAAACTCTTATTGGCTGGCTATTTTTAAAAGATCCTCAAAGATTATCAACAATTTTTGAATATTTAGA
ATTAAAAATGAATTGAATCT

Downstream 100 bases:

>100_bases
TTTTATTGTTAATAGTCGCTGTTTTTTAATAACAATAAAATGTTGTTGTTTCAATACATTAATATAATTAATAAAAATTT
ATTGAATTTTCACTACAAAA

Product: RNA methyltransferase TrmH, group 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKNSSNKFRGRNIKEYKKNSDFSYYSKNTNRSEKNDKFLNKYANNKKVENLSKNKESNTFSSFKRRNTKFKSNTEFSNKN
SDIHQEFTNKRNFDDWIWGKHSVYETLSSDRAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTCGASHQ
GVALQLACSKTIPLEQLIYFSKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRRSAGLTGTVAKVAAGALE
HLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKAPLVVVVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNA
SVAAAISLYHLTGK

Sequences:

>Translated_334_residues
MKNSSNKFRGRNIKEYKKNSDFSYYSKNTNRSEKNDKFLNKYANNKKVENLSKNKESNTFSSFKRRNTKFKSNTEFSNKN
SDIHQEFTNKRNFDDWIWGKHSVYETLSSDRAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTCGASHQ
GVALQLACSKTIPLEQLIYFSKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRRSAGLTGTVAKVAAGALE
HLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKAPLVVVVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNA
SVAAAISLYHLTGK
>Mature_334_residues
MKNSSNKFRGRNIKEYKKNSDFSYYSKNTNRSEKNDKFLNKYANNKKVENLSKNKESNTFSSFKRRNTKFKSNTEFSNKN
SDIHQEFTNKRNFDDWIWGKHSVYETLSSDRAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTCGASHQ
GVALQLACSKTIPLEQLIYFSKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRRSAGLTGTVAKVAAGALE
HLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKAPLVVVVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNA
SVAAAISLYHLTGK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=188, Percent_Identity=32.9787234042553, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI1790623, Length=249, Percent_Identity=33.7349397590361, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1788935, Length=224, Percent_Identity=23.6607142857143, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17555908, Length=254, Percent_Identity=26.7716535433071, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324775, Length=301, Percent_Identity=26.578073089701, Blast_Score=84, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 37381; Mature: 37381

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSSNKFRGRNIKEYKKNSDFSYYSKNTNRSEKNDKFLNKYANNKKVENLSKNKESNTF
CCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHH
SSFKRRNTKFKSNTEFSNKNSDIHQEFTNKRNFDDWIWGKHSVYETLSSDRAINRIWCTS
HHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHCCCHHHHHHHHCCCCHHEEEECH
EIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTCGASHQGVALQLACSKTIPLEQLIYF
HHHCCCCEEEEEEECCCCCEEEEECCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHH
SKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRRSAGLTGTVAKVAAGALE
HCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
HLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKAPLVVVVGSEDKGISLLTQ
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCCEEEEC
KKCDYILSIPLKGKTSSLNASVAAAISLYHLTGK
CCCCEEEEECCCCCCCCCCHHHEEEEEEEEECCC
>Mature Secondary Structure
MKNSSNKFRGRNIKEYKKNSDFSYYSKNTNRSEKNDKFLNKYANNKKVENLSKNKESNTF
CCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHH
SSFKRRNTKFKSNTEFSNKNSDIHQEFTNKRNFDDWIWGKHSVYETLSSDRAINRIWCTS
HHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHCCCHHHHHHHHCCCCHHEEEECH
EIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTCGASHQGVALQLACSKTIPLEQLIYF
HHHCCCCEEEEEEECCCCCEEEEECCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHH
SKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRRSAGLTGTVAKVAAGALE
HCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
HLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKAPLVVVVGSEDKGISLLTQ
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCCEEEEC
KKCDYILSIPLKGKTSSLNASVAAAISLYHLTGK
CCCCEEEEECCCCCCCCCCHHHEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]