Click here to switch to the map view.

The map label for this gene is ndhC

Identifier: 126695656

GI number: 126695656

Start: 293379

End: 293741

Strand: Reverse

Name: ndhC

Synonym: P9301_03181

Alternate gene names: 126695656

Gene position: 293741-293379 (Counterclockwise)

Preceding gene: 126695663

Following gene: 126695655

Centisome position: 17.89

GC content: 36.36

Gene sequence:

>363_bases
ATGTTTTTATTAACTGGCTATGAATACTTTTTAGGTTTCCTTTTAATTGCCGCAGCTGTTCCAGTATTAGCTCTAGTTAC
TAATCTCATAGTTGCTCCTAAAGGCAGAGCAGGGGAAAGAAGACTTACATATGAGTCTGGAATGGAGCCTATTGGAGGAG
CATGGATTCAATTTAATATTCGTTATTACATGTTTGCTTTGGTTTTCGTTATATTTGATGTTGAGACAGTATTCCTTTAT
CCTTGGGCTGTAGCTTTTAATAGATTAGGCTTACTAGCATTTATTGAGGCTTTAATCTTCATTGCAATACTTGTTATTGC
CCTGGCATACGCATGGAGAAAAGGTGCTTTAGAATGGAGTTAA

Upstream 100 bases:

>100_bases
GCTGGTTGAATGTTTTCACTCACGGTTTATTATTGTTCTTTAAGAACTTTAAAAGATTTTGCTTAATTAAGCGACTTTTA
TTCAAAATTAATTTTTTAAG

Downstream 100 bases:

>100_bases
AAAATTGAATCCACAATTATCCCCAAAAGCAATAAGAGAAATTCGAGAAGGGACTTGCAACCCTCTTGGTGCACCCCAAG
TAACTACAGATTTGAGCGAA

Product: NADH dehydrogenase subunit A

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit 3; NADH-plastoquinone oxidoreductase subunit 3; NDH-1 subunit 3; NDH-C

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MFLLTGYEYFLGFLLIAAAVPVLALVTNLIVAPKGRAGERRLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS

Sequences:

>Translated_120_residues
MFLLTGYEYFLGFLLIAAAVPVLALVTNLIVAPKGRAGERRLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS
>Mature_120_residues
MFLLTGYEYFLGFLLIAAAVPVLALVTNLIVAPKGRAGERRLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0838

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 3 (chain A)

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 3 family

Homologues:

Organism=Escherichia coli, GI1788625, Length=108, Percent_Identity=36.1111111111111, Blast_Score=80, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NU3C_PROM0 (A3PB16)

Other databases:

- EMBL:   CP000576
- RefSeq:   YP_001090542.1
- STRING:   A3PB16
- GeneID:   4912688
- GenomeReviews:   CP000576_GR
- KEGG:   pmg:P9301_03181
- eggNOG:   COG0838
- HOGENOM:   HBG605540
- OMA:   GERELTY
- ProtClustDB:   PRK06602
- BioCyc:   PMAR167546:P9301ORF_0323-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01394
- InterPro:   IPR023043
- InterPro:   IPR000440
- PANTHER:   PTHR11058

Pfam domain/function: PF00507 Oxidored_q4

EC number: 1.6.5.3

Molecular weight: Translated: 13562; Mature: 13562

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1c926b3c)-; HASH(0x1cadbbc4)-; HASH(0x1c390794)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLLTGYEYFLGFLLIAAAVPVLALVTNLIVAPKGRAGERRLTYESGMEPIGGAWIQFNI
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCEEEEEHH
RYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
>Mature Secondary Structure
MFLLTGYEYFLGFLLIAAAVPVLALVTNLIVAPKGRAGERRLTYESGMEPIGGAWIQFNI
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCEEEEEHH
RYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA