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The map label for this gene is rbcR [H]

Identifier: 126695504

GI number: 126695504

Start: 153696

End: 154640

Strand: Reverse

Name: rbcR [H]

Synonym: P9301_01661

Alternate gene names: 126695504

Gene position: 154640-153696 (Counterclockwise)

Preceding gene: 126695510

Following gene: 126695501

Centisome position: 9.42

GC content: 35.03

Gene sequence:

>945_bases
ATGCCAGAATTACCATTTACACTCGACCAATTAAGAATATTAAAAGCTATAGCAGCTCAAGGAAGTTTTAAAAAAGCTGC
AGATATCTTATATGTAACCCAACCTGCCGTAAGTTTACAAATACAAAATTTAGAAAAACAACTTGAAATCACAATTTTCG
ACAGAGGTGGTAGGAAGGCTCTTTTGACTGAAGCAGGGAGACTATTGCTTGAATATTGTGAACGAATTTTGAATCAATGC
GACGAAGCTTGCAAAGCTATTGAAGATTTAAATAGCTTAAAAGGTGGAACTCTTGTCATTGGAGCGAGCCAAACAACGGG
TACCTATTTAATGCCGAGAATGATAGGACTATTCAGACAAAAATACCCTGATGTATCAGTTCAACTTCAAGTTCACAGTA
CAAGAAGAACTGGTTGGAGTGTGGCCAATGGACAAATTGACTTAGCCATTATTGGCGGACAATTACCTGGAGATTTGGAA
AATTTGCTACAAGTAATTCCATATGCCACTGATGAATTGGCATTAGTTTTACCATCTAAACATCAACTTTCGACTAAAAA
AGAGCTTCTAAAAGAAGACTTATACAAATTAAATTTTGTAACTTTAGACTCACAATCTACAACGAGAAAAGTTGTTGACA
AACTTCTCCAAGATTCTGGGCTTGATATTCAAAGATTAAAAATTGAGATGGAACTTAACTCTCTTGAAGCAATCAAGAAT
GCAGTTCAATCAGGTTTGGGAGCTTCCTTTTTGCCTGTTGTTTCTATTGAAAGAGAATTATCGGCTGGAACAATCCACAA
AGCATTCGTTGCTGATTTAGAGGTAAAAAGAGAACTTAAATTAATTACTAATCCGTCAAGATATACATCAAGAGCATCAG
AAGTATTTAAGAAAAACATTCTTCCACAATTTGCTAGTTTAGAAAGCCCTTTGAGGTATTTATAA

Upstream 100 bases:

>100_bases
GTTTTATGAGTCTCCATTAAATTAAATTGTTCAAATAAATTTTGTTCTTAACAAGAATGCTCCTAAGCATTAGAATTATA
AGAAATTGTAGGCATAATAG

Downstream 100 bases:

>100_bases
TATCGATCAAAACTGAATTGCTTCTTTATTAATACCTACACCGCCGTCTTCAGCTTGTCCATCACCCTTAATTATAAATT
TATTTTCATTTACATCAGTC

Product: putative Rubisco transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MPELPFTLDQLRILKAIAAQGSFKKAADILYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEAGRLLLEYCERILNQC
DEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLE
NLLQVIPYATDELALVLPSKHQLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
AVQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNILPQFASLESPLRYL

Sequences:

>Translated_314_residues
MPELPFTLDQLRILKAIAAQGSFKKAADILYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEAGRLLLEYCERILNQC
DEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLE
NLLQVIPYATDELALVLPSKHQLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
AVQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNILPQFASLESPLRYL
>Mature_313_residues
PELPFTLDQLRILKAIAAQGSFKKAADILYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEAGRLLLEYCERILNQCD
EACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLEN
LLQVIPYATDELALVLPSKHQLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKNA
VQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNILPQFASLESPLRYL

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=30.8016877637131, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=31.2714776632302, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=25.6055363321799, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=26.1904761904762, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787879, Length=300, Percent_Identity=29.3333333333333, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=28.6885245901639, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082132, Length=255, Percent_Identity=26.2745098039216, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=28.0632411067194, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=24.3986254295533, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788626, Length=259, Percent_Identity=28.1853281853282, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789204, Length=297, Percent_Identity=24.9158249158249, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=25.4032258064516, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=27.4193548387097, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082024, Length=280, Percent_Identity=26.7857142857143, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789173, Length=311, Percent_Identity=27.9742765273312, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=257, Percent_Identity=28.4046692607004, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081904, Length=225, Percent_Identity=27.5555555555556, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=24.4979919678715, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=31.9672131147541, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=256, Percent_Identity=26.5625, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=28.6885245901639, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786448, Length=265, Percent_Identity=27.9245283018868, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787806, Length=250, Percent_Identity=21.6, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789492, Length=88, Percent_Identity=38.6363636363636, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787128, Length=118, Percent_Identity=35.5932203389831, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790011, Length=285, Percent_Identity=22.8070175438596, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786401, Length=150, Percent_Identity=29.3333333333333, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34922; Mature: 34791

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPELPFTLDQLRILKAIAAQGSFKKAADILYVTQPAVSLQIQNLEKQLEITIFDRGGRKA
CCCCCCHHHHHHHHHHHHHCCCCHHHHCEEEEECCHHHHHHHCCCCEEEEEEEECCCCCH
LLTEAGRLLLEYCERILNQCDEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLENLLQVIPYATDELALVLPSK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCC
HQLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
HHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHH
AVQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNI
HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHC
LPQFASLESPLRYL
CHHHHHHCCCHHCC
>Mature Secondary Structure 
PELPFTLDQLRILKAIAAQGSFKKAADILYVTQPAVSLQIQNLEKQLEITIFDRGGRKA
CCCCCHHHHHHHHHHHHHCCCCHHHHCEEEEECCHHHHHHHCCCCEEEEEEEECCCCCH
LLTEAGRLLLEYCERILNQCDEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLENLLQVIPYATDELALVLPSK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCC
HQLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
HHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHH
AVQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNI
HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHC
LPQFASLESPLRYL
CHHHHHHCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]