| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126700637
Identifier: 126700637
GI number: 126700637
Start: 3505322
End: 3506176
Strand: Direct
Name: 126700637
Synonym: CD3017
Alternate gene names: NA
Gene position: 3505322-3506176 (Clockwise)
Preceding gene: 126700627
Following gene: 126700650
Centisome position: 81.7
GC content: 27.84
Gene sequence:
>855_bases ATGCTGACAATAATTATTGCTTTACTTCCTGTAATGGGATGGGGATTGATGCCCATAGTTGCAAATCTAAAGAAAAGTTC TCCTCATGAACAGCTTTTAGGTACATCCATAAGTGCGTTTATATTTTCCACTATAATAACTCTGGTTATACATCCTGAAA TTACATTTTTTTCATTTTGTATAAGTATGATTTCTGGCATATTCTGGAGTTTGGGACAATTAATGCAGTTTAAAGCAATT CAAATTGCTAGTGTATCTAAAGTAATGCCAATTTCAAATGGTTCACAATTAACTTTTACGACATTATTAGCTGTAATCTT GTTTAATGAATGGACCAGTTCTAAAATGTTACTGATTGGTTCTTTATCAATATTATGTATAATACTTGGTATACTTCTCA CAAATTATCAAACTAAAAAATCTACAGATAAAAATATGTTAAAATGTGTTGGAGTTGTATTATTATCATCTCTATTTTTA TCATTATATGTTGTAACTAATCAAATATTTTTAATTGAAGGATATAGAATTATATTACCTCAATCTGTTGGTATGTTGAT AACTTCATCTATTATTGTCAAGTATTTTTCTAAAGAGATTGTATATAGGGAAAATGTTTTATTCAATTTAATTACTGGTA TATTGTGGTCAATAGCAAATTTAGGTATGTTCATAACGACTAATACATTGGGAGTTACAATAAGTTTTTCTATCTCTCAG AGTTGTGTGATAGTAGCCACTTTAGGAGGGATTATATTTTTTAAAGAAAAGAAGAACAAAAAAGAATGGCTTGCTATTTT TATTGGTATAATACTAATCATGTCTGGTGTCTTTATGTTGAGTATTATAAAATAG
Upstream 100 bases:
>100_bases TATTTCCTGATTAAATACGGTAATTTTTATGTATTGAACACTTTAATTTTAGATGATAAATTAAAAGCTGTCTAAATTTA ATATGAAAGGAAATAGTTTA
Downstream 100 bases:
>100_bases GTATTTATTTACACTAATCATATATAGTTTTGTACATATAAATTAACTGTTTCTATTTATTTAAATAAATTTGCTTATAT ACTTAAAATAATAGCATATG
Product: sugar uptake protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MLTIIIALLPVMGWGLMPIVANLKKSSPHEQLLGTSISAFIFSTIITLVIHPEITFFSFCISMISGIFWSLGQLMQFKAI QIASVSKVMPISNGSQLTFTTLLAVILFNEWTSSKMLLIGSLSILCIILGILLTNYQTKKSTDKNMLKCVGVVLLSSLFL SLYVVTNQIFLIEGYRIILPQSVGMLITSSIIVKYFSKEIVYRENVLFNLITGILWSIANLGMFITTNTLGVTISFSISQ SCVIVATLGGIIFFKEKKNKKEWLAIFIGIILIMSGVFMLSIIK
Sequences:
>Translated_284_residues MLTIIIALLPVMGWGLMPIVANLKKSSPHEQLLGTSISAFIFSTIITLVIHPEITFFSFCISMISGIFWSLGQLMQFKAI QIASVSKVMPISNGSQLTFTTLLAVILFNEWTSSKMLLIGSLSILCIILGILLTNYQTKKSTDKNMLKCVGVVLLSSLFL SLYVVTNQIFLIEGYRIILPQSVGMLITSSIIVKYFSKEIVYRENVLFNLITGILWSIANLGMFITTNTLGVTISFSISQ SCVIVATLGGIIFFKEKKNKKEWLAIFIGIILIMSGVFMLSIIK >Mature_284_residues MLTIIIALLPVMGWGLMPIVANLKKSSPHEQLLGTSISAFIFSTIITLVIHPEITFFSFCISMISGIFWSLGQLMQFKAI QIASVSKVMPISNGSQLTFTTLLAVILFNEWTSSKMLLIGSLSILCIILGILLTNYQTKKSTDKNMLKCVGVVLLSSLFL SLYVVTNQIFLIEGYRIILPQSVGMLITSSIIVKYFSKEIVYRENVLFNLITGILWSIANLGMFITTNTLGVTISFSISQ SCVIVATLGGIIFFKEKKNKKEWLAIFIGIILIMSGVFMLSIIK
Specific function: Unknown
COG id: COG4975
COG function: function code G; Putative glucose uptake permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GRP transporter (TC 2.A.7.5) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010651 [H]
Pfam domain/function: PF06800 Sugar_transport [H]
EC number: NA
Molecular weight: Translated: 31431; Mature: 31431
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTIIIALLPVMGWGLMPIVANLKKSSPHEQLLGTSISAFIFSTIITLVIHPEITFFSFC CHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH ISMISGIFWSLGQLMQFKAIQIASVSKVMPISNGSQLTFTTLLAVILFNEWTSSKMLLIG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHH SLSILCIILGILLTNYQTKKSTDKNMLKCVGVVLLSSLFLSLYVVTNQIFLIEGYRIILP HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECEEEECC QSVGMLITSSIIVKYFSKEIVYRENVLFNLITGILWSIANLGMFITTNTLGVTISFSISQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEEEEEECCC SCVIVATLGGIIFFKEKKNKKEWLAIFIGIILIMSGVFMLSIIK CEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLTIIIALLPVMGWGLMPIVANLKKSSPHEQLLGTSISAFIFSTIITLVIHPEITFFSFC CHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH ISMISGIFWSLGQLMQFKAIQIASVSKVMPISNGSQLTFTTLLAVILFNEWTSSKMLLIG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHH SLSILCIILGILLTNYQTKKSTDKNMLKCVGVVLLSSLFLSLYVVTNQIFLIEGYRIILP HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECEEEECC QSVGMLITSSIIVKYFSKEIVYRENVLFNLITGILWSIANLGMFITTNTLGVTISFSISQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEEEEEECCC SCVIVATLGGIIFFKEKKNKKEWLAIFIGIILIMSGVFMLSIIK CEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11679669 [H]