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The map label for this gene is cisA [H]

Identifier: 126700571

GI number: 126700571

Start: 3427501

End: 3428859

Strand: Direct

Name: cisA [H]

Synonym: CD2952

Alternate gene names: 126700571

Gene position: 3427501-3428859 (Clockwise)

Preceding gene: 126700570

Following gene: 126700587

Centisome position: 79.89

GC content: 25.97

Gene sequence:

>1359_bases
ATGTTAAGAGTAGCACTTTATATACGTGTTAGTACAGAAGAACAAGCTTTAAATGGAGATAGCATAAGGACACAAATAGA
GGCTTTAGAACAGTACTCTAAAGAGAATGATTTTAACATAGTTGGTAAATACATTGATGAAGGTTGCTCTGCAACTAATT
TAAAAAGACCTAACTTACAACGATTATTAAGAGATGTGGAAAAAGATAAAGTAGACCTAGTTTTAATGACTAAAATTGAT
AGACTAAGTCGTGGCGTTAAAAACTATTATAAAATAATGGAAACCTTGGAAAAACATAAGTGTGATTGGAAAACCATTTT
AGAAAACTACGATTCTAGCACTGCTGCTGGTAGATTACATATAAACATTATGCTATCTGTAGCAGAAAATGAAGCAGCTC
AAACATCTGAAAGAATAAAATTTGTTTTTCAGGATAAATTGAGACGTAAAGAAGTTATAAGTGGTACAATTCCCATAGGT
TACAAAATAGAAAATAAGCATCTAGTTATTGATAAAGAAAAAAAATATATAGTTAAAGCTATATTTGACGAATACGAGAA
ATCAGGTTCTGTTAGGACTTTAATAGAAACAATTAATAATCTTCATGGCGAATTATACAGTTATAATAAAATAAAGAATA
TACTAAGAAATGAACTTTATATAGGAATCTATAATAAACGAGGATTTTATGTTGAAGATTATTGTGAACCTATTATATCA
AAAAAACAATTTAAACAAATCCAAAGAATATTAGAAAAAAATAAAAAAACTACTCCTAATAAAAACATACATTATCATAT
TTTTTCTGGTCTTTTAAAATGTAAGGAGTGTGGTTATACATTAAAGGGTAATTCTAGTAATGTTGGAGAAAAACTTTATT
TATCTTATAGATGTTCTACATTCTATCTAAATAAAAACTGTGTACACAATGTAACTCATAATGAAAAACATATAGAAAAC
TACCTTTTGACTAACTTAAAACCACAATTACATAAACATATGGTGAAATTAGAAGCACAAAATGAAAAAATCAGACGAAA
TAAGAAATCTAACAAAAAAGATGAAAAGAAGAAAATCATGAAAAAATTAGATAAAATCAAAGATTTATATTTAGAGGATT
TGATTGATAAAGAGACTTATAGAAAAGATTATGAAAAATTACAATCTCAACTGGATAATATAACTGAAGAACAGGAGAGT
CAAATTATTGATACATCACATATAAAAAAATTCTTAGATATTGATATTAATGAGATGTATAGTGATTTAAGCAGGGTTGA
ACGCAGACGTTTTTGGTTATCTATAATAGATTATATAGAAATAGATAATAACAAAAACATCACTATTAATTTTATATAA

Upstream 100 bases:

>100_bases
CCAAGATTTAGTATTATGAATGCAAATTTTTTGTAACAATTCATAGTATATTTAAGAGCCGTTCAGCTCCTCTTAAATAT
ACAATAAGGGGGAATGTAAA

Downstream 100 bases:

>100_bases
TTATTTGGACTAACATATAGTATCCACTAGGTCCGAGTAAACATAGAAATTCCCCTTCTTCAATATCCAAACTAATATTA
TTTAAAACCTTTTTTTGGTC

Product: phage site-specific recombinase

Products: NA

Alternate protein names: Stage IV sporulation protein CA [H]

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MLRVALYIRVSTEEQALNGDSIRTQIEALEQYSKENDFNIVGKYIDEGCSATNLKRPNLQRLLRDVEKDKVDLVLMTKID
RLSRGVKNYYKIMETLEKHKCDWKTILENYDSSTAAGRLHINIMLSVAENEAAQTSERIKFVFQDKLRRKEVISGTIPIG
YKIENKHLVIDKEKKYIVKAIFDEYEKSGSVRTLIETINNLHGELYSYNKIKNILRNELYIGIYNKRGFYVEDYCEPIIS
KKQFKQIQRILEKNKKTTPNKNIHYHIFSGLLKCKECGYTLKGNSSNVGEKLYLSYRCSTFYLNKNCVHNVTHNEKHIEN
YLLTNLKPQLHKHMVKLEAQNEKIRRNKKSNKKDEKKKIMKKLDKIKDLYLEDLIDKETYRKDYEKLQSQLDNITEEQES
QIIDTSHIKKFLDIDINEMYSDLSRVERRRFWLSIIDYIEIDNNKNITINFI

Sequences:

>Translated_452_residues
MLRVALYIRVSTEEQALNGDSIRTQIEALEQYSKENDFNIVGKYIDEGCSATNLKRPNLQRLLRDVEKDKVDLVLMTKID
RLSRGVKNYYKIMETLEKHKCDWKTILENYDSSTAAGRLHINIMLSVAENEAAQTSERIKFVFQDKLRRKEVISGTIPIG
YKIENKHLVIDKEKKYIVKAIFDEYEKSGSVRTLIETINNLHGELYSYNKIKNILRNELYIGIYNKRGFYVEDYCEPIIS
KKQFKQIQRILEKNKKTTPNKNIHYHIFSGLLKCKECGYTLKGNSSNVGEKLYLSYRCSTFYLNKNCVHNVTHNEKHIEN
YLLTNLKPQLHKHMVKLEAQNEKIRRNKKSNKKDEKKKIMKKLDKIKDLYLEDLIDKETYRKDYEKLQSQLDNITEEQES
QIIDTSHIKKFLDIDINEMYSDLSRVERRRFWLSIIDYIEIDNNKNITINFI
>Mature_452_residues
MLRVALYIRVSTEEQALNGDSIRTQIEALEQYSKENDFNIVGKYIDEGCSATNLKRPNLQRLLRDVEKDKVDLVLMTKID
RLSRGVKNYYKIMETLEKHKCDWKTILENYDSSTAAGRLHINIMLSVAENEAAQTSERIKFVFQDKLRRKEVISGTIPIG
YKIENKHLVIDKEKKYIVKAIFDEYEKSGSVRTLIETINNLHGELYSYNKIKNILRNELYIGIYNKRGFYVEDYCEPIIS
KKQFKQIQRILEKNKKTTPNKNIHYHIFSGLLKCKECGYTLKGNSSNVGEKLYLSYRCSTFYLNKNCVHNVTHNEKHIEN
YLLTNLKPQLHKHMVKLEAQNEKIRRNKKSNKKDEKKKIMKKLDKIKDLYLEDLIDKETYRKDYEKLQSQLDNITEEQES
QIIDTSHIKKFLDIDINEMYSDLSRVERRRFWLSIIDYIEIDNNKNITINFI

Specific function: Putative site-specific recombinase having a very important role in sporulation. It probably plays a role in the recombination of spoIIIC and spoIVCB to form sigma K factor [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006118
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 53599; Mature: 53599

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVALYIRVSTEEQALNGDSIRTQIEALEQYSKENDFNIVGKYIDEGCSATNLKRPNLQ
CEEEEEEEEEECHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHH
RLLRDVEKDKVDLVLMTKIDRLSRGVKNYYKIMETLEKHKCDWKTILENYDSSTAAGRLH
HHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEE
INIMLSVAENEAAQTSERIKFVFQDKLRRKEVISGTIPIGYKIENKHLVIDKEKKYIVKA
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEECHHHHHHHH
IFDEYEKSGSVRTLIETINNLHGELYSYNKIKNILRNELYIGIYNKRGFYVEDYCEPIIS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHC
KKQFKQIQRILEKNKKTTPNKNIHYHIFSGLLKCKECGYTLKGNSSNVGEKLYLSYRCST
HHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEEEE
FYLNKNCVHNVTHNEKHIENYLLTNLKPQLHKHMVKLEAQNEKIRRNKKSNKKDEKKKIM
EEECCCHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KKLDKIKDLYLEDLIDKETYRKDYEKLQSQLDNITEEQESQIIDTSHIKKFLDIDINEMY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHH
SDLSRVERRRFWLSIIDYIEIDNNKNITINFI
HHHHHHHHHHHHHHHHHHEEECCCCCEEEEEC
>Mature Secondary Structure
MLRVALYIRVSTEEQALNGDSIRTQIEALEQYSKENDFNIVGKYIDEGCSATNLKRPNLQ
CEEEEEEEEEECHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHH
RLLRDVEKDKVDLVLMTKIDRLSRGVKNYYKIMETLEKHKCDWKTILENYDSSTAAGRLH
HHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEE
INIMLSVAENEAAQTSERIKFVFQDKLRRKEVISGTIPIGYKIENKHLVIDKEKKYIVKA
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEECHHHHHHHH
IFDEYEKSGSVRTLIETINNLHGELYSYNKIKNILRNELYIGIYNKRGFYVEDYCEPIIS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHC
KKQFKQIQRILEKNKKTTPNKNIHYHIFSGLLKCKECGYTLKGNSSNVGEKLYLSYRCST
HHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEEEE
FYLNKNCVHNVTHNEKHIENYLLTNLKPQLHKHMVKLEAQNEKIRRNKKSNKKDEKKKIM
EEECCCHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KKLDKIKDLYLEDLIDKETYRKDYEKLQSQLDNITEEQESQIIDTSHIKKFLDIDINEMY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHH
SDLSRVERRRFWLSIIDYIEIDNNKNITINFI
HHHHHHHHHHHHHHHHHHEEECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2105293; 7704261; 8969508; 9384377 [H]