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The map label for this gene is yqiR [H]

Identifier: 126700347

GI number: 126700347

Start: 3167086

End: 3169206

Strand: Direct

Name: yqiR [H]

Synonym: CD2732

Alternate gene names: 126700347

Gene position: 3167086-3169206 (Clockwise)

Preceding gene: 126700343

Following gene: 126700348

Centisome position: 73.82

GC content: 26.5

Gene sequence:

>2121_bases
ATGAAACAAATGGAATTAGCTATTGTAAGTTTAAAAAAAGACGCTGGAGAAATTTATGAAAATCAAATAAGGCAATTCTT
AGGTGATAATCTGAATATAAATTTATACTCATTTGAAGAGGGAAATTTAAAGTTTTTTAAAGAAAAACTTATACTCCTAT
CTGCTTATTTAAAATATGATGAAATAGTAAAATTATCTCACTATGATGCTCAAATCATTGTTCCCAAGTTGACATTTGAA
AAGAACAGTATTGATATGATATCCAAATTAGAAAAAGATAAAATTATTTATGTATATAACTTAAGTAAAGATATGGCAAT
AGAAACAATTTCTTTAATACATAGATTAGGAATAGACAATATAAATATCCTGCCCTGCTATCCAGAGATTGAGTTTACTC
CCACAGATGCTGTAATCCTAACTCCTGGCGAAAAAATCTTGCCTAAGTTTAAAAATTGTGAAGTTATAGATTTAAAATAC
AGAATAATAGATTTAAGTTGTATTGTTGAAATTGCTACAAAAACCAAATTAAAACATCTAATAAAAGATGACCTAATAAA
AAAATACGTAGAAAAAATAATTCCTACAAGTTATAGTACAGGTGAGTTATTGTTAGATGCAAATAAGTTTGAAAGACAAT
TTGATTTGTTACTATCTATAATTGATGATGGAATTATATGCACAAATAACGATGGAATAATTCAATTCTATAATCATATG
GCTAGAAAAATTTTGTCTATAAATGCAAATGAAATGATTGACTCATTTGTTGGCGATTGCATAAAAGACATCAATTTTCA
AAGCATATTGACCAATAAAACTCCATTTTTTGAGAAATTGATTAAAATAAATCATATTGATATAAATTTAGAGATTAAAC
ATATACAATTAAATGTATTTGATGGATTTATACTAAAGATGACAAAGTTTTCTCAATTAGAAAAAAAGCAAGCTAAATTA
AGAGCACAACTAGTAAACTCTGGTAATATCAGTAAATACACATTTGATGATATATTAGGTTCTAGTATACAAACTATTAA
TACAAAAAAAATTGCTAATAAAATGGCTCAATCAAATTCATCTATCCTTATAATTGGTGAAAGTGGTACTGGTAAAGAAT
TATTTGCTCAATCCATTCATAGTGCTTCTAGGAGAAAAGATGGTCCTTTTGTCGCAGTAAATTGTAGTACTTTTCAAGAA
AATCTACTGCAAAGTGAATTATTTGGCTATGATGAAGGGGCTTTTACTGGTGCTAAAAAAGGTGGGAAAATTGGTTTATT
TGAATTAGCCAACAATGGAACTATATTTTTAGACGAAATTGGAGAAATGGATTTAAATTCTCAATCTAAATTACTTAGAG
TCATACAAGAAAAACAAGTACGACGTATTGGTTCTAATAATGTCATTGACATTGATGTAAGAATAATTGCAGCTACTAAT
AGAAATTTAAAAGAACTTGTATCTAAAAATATGTTTAGAAGAGATTTATATTTTAGGTTGAATGTTCTTCCCCTTAAAAT
ACATCCACTTAGGGAAAGACCTGCTGATATATTTGAAATTTTTGGTTCATTAAAATATGATATTCCATGTAATTTTATTC
TAAGTGAGGAAGTAAAAGAAATCTTTAAAATGTATAGATGGGAAGGAAATGTAAGAGAATTAAGAAACTTAGGAGAATAC
TTCTGTTACTTGGAAAAAGATATTATAGAAATATGTGATTTACCTGAATATATATTGGATACTATAGATTCAAATTATAG
TAGAACCGTTTGTAATAAAGTAAGTGATAATATAAAAAAGTATCAATTCAACATTGGCAAAGACAAAAACATCATGAAAT
ACGACTATAATTTTAAAAAGTCACTAGATGAATACATATTTATATTGGATAATTTAAAAAAGGCTTATGATTTAAAAGAA
AGAATAGGTAGAAAAAGCTTATGTAAAATAGCTTTAGAGGAAAATAGATTTTTGACAGAACAACAGATTAGAAATATGCT
TTTAGAACTACAAGACTTTGGGCTTGTAGACATACTTGTTGGTCGTGGAGGTTCAATTATAACATCAAAAGGAGTAGAAT
TTCTAAAAAATATAAATAGGTCTAATAAGTTAAACAGTTAA

Upstream 100 bases:

>100_bases
TAGTCTATAATAAATTTATAATAATAATTAAATAATATTATTTAATCTAATTTAATTATTATGTAATCTAAAATAAGTCA
AATTTGTATGAGAGGTTAAA

Downstream 100 bases:

>100_bases
ACCTATTTAACCTATTTAATTACATTTTCATATATTTAAAAATTTATTAGAAATAACCTTTTCCACAAAGTTTTAAGTAT
AATTAATATTTTTATCTTAT

Product: sigma-54-interacting regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MKQMELAIVSLKKDAGEIYENQIRQFLGDNLNINLYSFEEGNLKFFKEKLILLSAYLKYDEIVKLSHYDAQIIVPKLTFE
KNSIDMISKLEKDKIIYVYNLSKDMAIETISLIHRLGIDNINILPCYPEIEFTPTDAVILTPGEKILPKFKNCEVIDLKY
RIIDLSCIVEIATKTKLKHLIKDDLIKKYVEKIIPTSYSTGELLLDANKFERQFDLLLSIIDDGIICTNNDGIIQFYNHM
ARKILSINANEMIDSFVGDCIKDINFQSILTNKTPFFEKLIKINHIDINLEIKHIQLNVFDGFILKMTKFSQLEKKQAKL
RAQLVNSGNISKYTFDDILGSSIQTINTKKIANKMAQSNSSILIIGESGTGKELFAQSIHSASRRKDGPFVAVNCSTFQE
NLLQSELFGYDEGAFTGAKKGGKIGLFELANNGTIFLDEIGEMDLNSQSKLLRVIQEKQVRRIGSNNVIDIDVRIIAATN
RNLKELVSKNMFRRDLYFRLNVLPLKIHPLRERPADIFEIFGSLKYDIPCNFILSEEVKEIFKMYRWEGNVRELRNLGEY
FCYLEKDIIEICDLPEYILDTIDSNYSRTVCNKVSDNIKKYQFNIGKDKNIMKYDYNFKKSLDEYIFILDNLKKAYDLKE
RIGRKSLCKIALEENRFLTEQQIRNMLLELQDFGLVDILVGRGGSIITSKGVEFLKNINRSNKLNS

Sequences:

>Translated_706_residues
MKQMELAIVSLKKDAGEIYENQIRQFLGDNLNINLYSFEEGNLKFFKEKLILLSAYLKYDEIVKLSHYDAQIIVPKLTFE
KNSIDMISKLEKDKIIYVYNLSKDMAIETISLIHRLGIDNINILPCYPEIEFTPTDAVILTPGEKILPKFKNCEVIDLKY
RIIDLSCIVEIATKTKLKHLIKDDLIKKYVEKIIPTSYSTGELLLDANKFERQFDLLLSIIDDGIICTNNDGIIQFYNHM
ARKILSINANEMIDSFVGDCIKDINFQSILTNKTPFFEKLIKINHIDINLEIKHIQLNVFDGFILKMTKFSQLEKKQAKL
RAQLVNSGNISKYTFDDILGSSIQTINTKKIANKMAQSNSSILIIGESGTGKELFAQSIHSASRRKDGPFVAVNCSTFQE
NLLQSELFGYDEGAFTGAKKGGKIGLFELANNGTIFLDEIGEMDLNSQSKLLRVIQEKQVRRIGSNNVIDIDVRIIAATN
RNLKELVSKNMFRRDLYFRLNVLPLKIHPLRERPADIFEIFGSLKYDIPCNFILSEEVKEIFKMYRWEGNVRELRNLGEY
FCYLEKDIIEICDLPEYILDTIDSNYSRTVCNKVSDNIKKYQFNIGKDKNIMKYDYNFKKSLDEYIFILDNLKKAYDLKE
RIGRKSLCKIALEENRFLTEQQIRNMLLELQDFGLVDILVGRGGSIITSKGVEFLKNINRSNKLNS
>Mature_706_residues
MKQMELAIVSLKKDAGEIYENQIRQFLGDNLNINLYSFEEGNLKFFKEKLILLSAYLKYDEIVKLSHYDAQIIVPKLTFE
KNSIDMISKLEKDKIIYVYNLSKDMAIETISLIHRLGIDNINILPCYPEIEFTPTDAVILTPGEKILPKFKNCEVIDLKY
RIIDLSCIVEIATKTKLKHLIKDDLIKKYVEKIIPTSYSTGELLLDANKFERQFDLLLSIIDDGIICTNNDGIIQFYNHM
ARKILSINANEMIDSFVGDCIKDINFQSILTNKTPFFEKLIKINHIDINLEIKHIQLNVFDGFILKMTKFSQLEKKQAKL
RAQLVNSGNISKYTFDDILGSSIQTINTKKIANKMAQSNSSILIIGESGTGKELFAQSIHSASRRKDGPFVAVNCSTFQE
NLLQSELFGYDEGAFTGAKKGGKIGLFELANNGTIFLDEIGEMDLNSQSKLLRVIQEKQVRRIGSNNVIDIDVRIIAATN
RNLKELVSKNMFRRDLYFRLNVLPLKIHPLRERPADIFEIFGSLKYDIPCNFILSEEVKEIFKMYRWEGNVRELRNLGEY
FCYLEKDIIEICDLPEYILDTIDSNYSRTVCNKVSDNIKKYQFNIGKDKNIMKYDYNFKKSLDEYIFILDNLKKAYDLKE
RIGRKSLCKIALEENRFLTEQQIRNMLLELQDFGLVDILVGRGGSIITSKGVEFLKNINRSNKLNS

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=380, Percent_Identity=35.2631578947368, Blast_Score=229, Evalue=5e-61,
Organism=Escherichia coli, GI1786524, Length=249, Percent_Identity=45.3815261044177, Blast_Score=226, Evalue=4e-60,
Organism=Escherichia coli, GI1789087, Length=264, Percent_Identity=44.3181818181818, Blast_Score=216, Evalue=3e-57,
Organism=Escherichia coli, GI1788550, Length=271, Percent_Identity=43.9114391143911, Blast_Score=208, Evalue=9e-55,
Organism=Escherichia coli, GI87082117, Length=218, Percent_Identity=45.8715596330275, Blast_Score=205, Evalue=1e-53,
Organism=Escherichia coli, GI1788905, Length=218, Percent_Identity=49.0825688073394, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI1790437, Length=322, Percent_Identity=35.7142857142857, Blast_Score=189, Evalue=5e-49,
Organism=Escherichia coli, GI87082152, Length=225, Percent_Identity=44, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI1790299, Length=384, Percent_Identity=31.5104166666667, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI1787583, Length=303, Percent_Identity=36.963696369637, Blast_Score=185, Evalue=8e-48,
Organism=Escherichia coli, GI87081872, Length=234, Percent_Identity=40.5982905982906, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI87081858, Length=445, Percent_Identity=29.2134831460674, Blast_Score=157, Evalue=3e-39,
Organism=Escherichia coli, GI1789828, Length=240, Percent_Identity=35.4166666666667, Blast_Score=129, Evalue=6e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 81390; Mature: 81390

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQMELAIVSLKKDAGEIYENQIRQFLGDNLNINLYSFEEGNLKFFKEKLILLSAYLKYD
CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCHH
EIVKLSHYDAQIIVPKLTFEKNSIDMISKLEKDKIIYVYNLSKDMAIETISLIHRLGIDN
HHEEEECCCCEEEEEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC
INILPCYPEIEFTPTDAVILTPGEKILPKFKNCEVIDLKYRIIDLSCIVEIATKTKLKHL
EEEEECCCCCEECCCCEEEECCCHHHCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHH
IKDDLIKKYVEKIIPTSYSTGELLLDANKFERQFDLLLSIIDDGIICTNNDGIIQFYNHM
HHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH
ARKILSINANEMIDSFVGDCIKDINFQSILTNKTPFFEKLIKINHIDINLEIKHIQLNVF
HHHHHHCCHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHEEEEEEEEEEEEEEEEEEE
DGFILKMTKFSQLEKKQAKLRAQLVNSGNISKYTFDDILGSSIQTINTKKIANKMAQSNS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHCCC
SILIIGESGTGKELFAQSIHSASRRKDGPFVAVNCSTFQENLLQSELFGYDEGAFTGAKK
CEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCC
GGKIGLFELANNGTIFLDEIGEMDLNSQSKLLRVIQEKQVRRIGSNNVIDIDVRIIAATN
CCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECC
RNLKELVSKNMFRRDLYFRLNVLPLKIHPLRERPADIFEIFGSLKYDIPCNFILSEEVKE
CCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCHHHHHHHCCCEECCCCCEEEHHHHHH
IFKMYRWEGNVRELRNLGEYFCYLEKDIIEICDLPEYILDTIDSNYSRTVCNKVSDNIKK
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCEE
YQFNIGKDKNIMKYDYNFKKSLDEYIFILDNLKKAYDLKERIGRKSLCKIALEENRFLTE
EEEECCCCCCEEEECCCHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCH
QQIRNMLLELQDFGLVDILVGRGGSIITSKGVEFLKNINRSNKLNS
HHHHHHHHHHHCCCEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKQMELAIVSLKKDAGEIYENQIRQFLGDNLNINLYSFEEGNLKFFKEKLILLSAYLKYD
CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCHH
EIVKLSHYDAQIIVPKLTFEKNSIDMISKLEKDKIIYVYNLSKDMAIETISLIHRLGIDN
HHEEEECCCCEEEEEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC
INILPCYPEIEFTPTDAVILTPGEKILPKFKNCEVIDLKYRIIDLSCIVEIATKTKLKHL
EEEEECCCCCEECCCCEEEECCCHHHCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHH
IKDDLIKKYVEKIIPTSYSTGELLLDANKFERQFDLLLSIIDDGIICTNNDGIIQFYNHM
HHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH
ARKILSINANEMIDSFVGDCIKDINFQSILTNKTPFFEKLIKINHIDINLEIKHIQLNVF
HHHHHHCCHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHEEEEEEEEEEEEEEEEEEE
DGFILKMTKFSQLEKKQAKLRAQLVNSGNISKYTFDDILGSSIQTINTKKIANKMAQSNS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHCCC
SILIIGESGTGKELFAQSIHSASRRKDGPFVAVNCSTFQENLLQSELFGYDEGAFTGAKK
CEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCC
GGKIGLFELANNGTIFLDEIGEMDLNSQSKLLRVIQEKQVRRIGSNNVIDIDVRIIAATN
CCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECC
RNLKELVSKNMFRRDLYFRLNVLPLKIHPLRERPADIFEIFGSLKYDIPCNFILSEEVKE
CCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCHHHHHHHCCCEECCCCCEEEHHHHHH
IFKMYRWEGNVRELRNLGEYFCYLEKDIIEICDLPEYILDTIDSNYSRTVCNKVSDNIKK
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCEE
YQFNIGKDKNIMKYDYNFKKSLDEYIFILDNLKKAYDLKERIGRKSLCKIALEENRFLTE
EEEECCCCCCEEEECCCHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCH
QQIRNMLLELQDFGLVDILVGRGGSIITSKGVEFLKNINRSNKLNS
HHHHHHHHHHHCCCEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]