| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is mtaD [H]
Identifier: 126700319
GI number: 126700319
Start: 3127142
End: 3128506
Strand: Direct
Name: mtaD [H]
Synonym: CD2705
Alternate gene names: 126700319
Gene position: 3127142-3128506 (Clockwise)
Preceding gene: 126700318
Following gene: 126700325
Centisome position: 72.89
GC content: 31.06
Gene sequence:
>1365_bases ATGTCACAATTACTTATAAAAAATGCATATCTAATTACTATGAATGCAGATAGAGAGGTATATGAAAATGGAAGCATACT TATTGAAAATAATATTATAAAAGAGGTTGGTAAGTTTGATATTAATATTGTAGATAAAGATGCAGAGATATATGATGCTA AAGGAAAAATACTAATGCCAGGGCTAGTCAATACGCATGTTCACTTATCTCAACAATTAGGACGTGGTCTTGCAGATGAT GTTGTACTTTTAACTTGGCTTAGAGAGAGAATTTGGCCATACGAAAGTAGCTTCAATTATGAAGATTCCTTGATTTCATC TACTGCATGTTGTGTTGAATTGATAAAATCTGGTGTCACTACATTTTTAGAATCTGGTGGTCAATATGTAGATGCTATGG TTGAGGCTGTTGATAAAACTGGACTTAGAGCCTGTTTAGCTAAATCAGTTATGGATACAGGAGATGGTCTTCCTGAGGCA TGGCAAAAAACTACTGATGAGGAAATCAATACTCAATTAGACTTATTCCATAAGTTTAATAATACATCTAATGAGAGAAT TAAAATATGGTTTGCATTAAGAACTATTTTTAATACAACTGAAGAATTACTTGTTAGAACTAAAGAACTAGCTGATAAAT ACAATACAGGTATACATATGCATATTGCTGAAATAGCTGATGAAATTTCATTTGTAAAGCAAAACAATGGAGTTGGAACA GTTGAATACCTTGATAAACTAGGTGTATTAGGACCAAATCTTTTAGCTGCTCATACAGTTTGGCTTACTCATAAGGAAAT TGATTTATTTAGATTACATGATGTAAAAGTTTCTCATGACCCAGGTTCAGCTATGAAAGTGGTTCTAGGATTTGCATCAA TTCCTGAAATGTTAGAAAAAGGAATACCTGTTTCAATTGGTACTGATGGAGCTCCTTCAAATAATAGAATGGACCTTATG AGGGACATGTATCTTACATCACTAATACATAAAGGAAGAACTTTAAACCCAACTGTCGTACCAGCTGAAGAAGTCTTAGA AATGGCTACTATAAATGGAGCAAAATGTGCTTTACTAGAAAAAGAAATTGGTAGTCTTGAAGTAGGAAAAAAAGCTGATA TGATTATTCTAAATCCAGATACAATTCATTGTTTACCAATGCATAATCCAATTGGAAATATAGTTTATTCTATGACTAGT GAAAATGTAGACTCTACTATTTGTGATGGTAAATGGTTGATGAAGGAAAGAAAAGTATTAGTTGTAGATGAATCTGAATT ATTAAATAAAGTTAAAAAACAAGCTTCTAAAATAAAAGATAAAGCAGAAGTTAAAATTCCATCTAAATTTAAAATTATAA AATAA
Upstream 100 bases:
>100_bases AATCACTTTATATGTAAATTGATTTTGCTATTAACTTTGTATAGAAAATTTATTATCATAATATATAGATATAAAAATAT ATAGAAAAGGAGTGGTGTTT
Downstream 100 bases:
>100_bases CATAAATTTCAATTGTTTTGTAAATATGAATATATAAATATATTTATATACATCATATATACAAAACAATTGTTTTTTTA TTTTATATTCATTAGCATTG
Product: amidohydrolas
Products: NA
Alternate protein names: MTA/SAH deaminase [H]
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MSQLLIKNAYLITMNADREVYENGSILIENNIIKEVGKFDINIVDKDAEIYDAKGKILMPGLVNTHVHLSQQLGRGLADD VVLLTWLRERIWPYESSFNYEDSLISSTACCVELIKSGVTTFLESGGQYVDAMVEAVDKTGLRACLAKSVMDTGDGLPEA WQKTTDEEINTQLDLFHKFNNTSNERIKIWFALRTIFNTTEELLVRTKELADKYNTGIHMHIAEIADEISFVKQNNGVGT VEYLDKLGVLGPNLLAAHTVWLTHKEIDLFRLHDVKVSHDPGSAMKVVLGFASIPEMLEKGIPVSIGTDGAPSNNRMDLM RDMYLTSLIHKGRTLNPTVVPAEEVLEMATINGAKCALLEKEIGSLEVGKKADMIILNPDTIHCLPMHNPIGNIVYSMTS ENVDSTICDGKWLMKERKVLVVDESELLNKVKKQASKIKDKAEVKIPSKFKIIK
Sequences:
>Translated_454_residues MSQLLIKNAYLITMNADREVYENGSILIENNIIKEVGKFDINIVDKDAEIYDAKGKILMPGLVNTHVHLSQQLGRGLADD VVLLTWLRERIWPYESSFNYEDSLISSTACCVELIKSGVTTFLESGGQYVDAMVEAVDKTGLRACLAKSVMDTGDGLPEA WQKTTDEEINTQLDLFHKFNNTSNERIKIWFALRTIFNTTEELLVRTKELADKYNTGIHMHIAEIADEISFVKQNNGVGT VEYLDKLGVLGPNLLAAHTVWLTHKEIDLFRLHDVKVSHDPGSAMKVVLGFASIPEMLEKGIPVSIGTDGAPSNNRMDLM RDMYLTSLIHKGRTLNPTVVPAEEVLEMATINGAKCALLEKEIGSLEVGKKADMIILNPDTIHCLPMHNPIGNIVYSMTS ENVDSTICDGKWLMKERKVLVVDESELLNKVKKQASKIKDKAEVKIPSKFKIIK >Mature_453_residues SQLLIKNAYLITMNADREVYENGSILIENNIIKEVGKFDINIVDKDAEIYDAKGKILMPGLVNTHVHLSQQLGRGLADDV VLLTWLRERIWPYESSFNYEDSLISSTACCVELIKSGVTTFLESGGQYVDAMVEAVDKTGLRACLAKSVMDTGDGLPEAW QKTTDEEINTQLDLFHKFNNTSNERIKIWFALRTIFNTTEELLVRTKELADKYNTGIHMHIAEIADEISFVKQNNGVGTV EYLDKLGVLGPNLLAAHTVWLTHKEIDLFRLHDVKVSHDPGSAMKVVLGFASIPEMLEKGIPVSIGTDGAPSNNRMDLMR DMYLTSLIHKGRTLNPTVVPAEEVLEMATINGAKCALLEKEIGSLEVGKKADMIILNPDTIHCLPMHNPIGNIVYSMTSE NVDSTICDGKWLMKERKVLVVDESELLNKVKKQASKIKDKAEVKIPSKFKIIK
Specific function: Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine [H]
COG id: COG0402
COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MTA/SAH deaminase family [H]
Homologues:
Organism=Homo sapiens, GI4758426, Length=332, Percent_Identity=29.2168674698795, Blast_Score=136, Evalue=5e-32, Organism=Escherichia coli, GI1789249, Length=371, Percent_Identity=27.4932614555256, Blast_Score=115, Evalue=7e-27, Organism=Escherichia coli, GI87082177, Length=452, Percent_Identity=24.1150442477876, Blast_Score=105, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6319963, Length=393, Percent_Identity=22.64631043257, Blast_Score=85, Evalue=2e-17, Organism=Drosophila melanogaster, GI24643849, Length=395, Percent_Identity=24.0506329113924, Blast_Score=105, Evalue=7e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 - InterPro: IPR011059 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: =3.5.4.28 [H]
Molecular weight: Translated: 50672; Mature: 50541
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQLLIKNAYLITMNADREVYENGSILIENNIIKEVGKFDINIVDKDAEIYDAKGKILMP CCCEEEECEEEEEECCCCHHHCCCCEEEECHHHHHHCCCEEEEEECCCEEEECCCCEECC GLVNTHVHLSQQLGRGLADDVVLLTWLRERIWPYESSFNYEDSLISSTACCVELIKSGVT CHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH TFLESGGQYVDAMVEAVDKTGLRACLAKSVMDTGDGLPEAWQKTTDEEINTQLDLFHKFN HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHC NTSNERIKIWFALRTIFNTTEELLVRTKELADKYNTGIHMHIAEIADEISFVKQNNGVGT CCCCCEEEEEEEHHHHHCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCH VEYLDKLGVLGPNLLAAHTVWLTHKEIDLFRLHDVKVSHDPGSAMKVVLGFASIPEMLEK HHHHHHHCCCCCCHHHHEEEEEEECCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC GIPVSIGTDGAPSNNRMDLMRDMYLTSLIHKGRTLNPTVVPAEEVLEMATINGAKCALLE CCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEH KEIGSLEVGKKADMIILNPDTIHCLPMHNPIGNIVYSMTSENVDSTICDGKWLMKERKVL HHCCCCCCCCCCCEEEECCCEEEEEECCCCHHHHEEEECCCCCCCHHCCCHHHHCCCCEE VVDESELLNKVKKQASKIKDKAEVKIPSKFKIIK EECHHHHHHHHHHHHHHCCCCCEEECCCCEEECC >Mature Secondary Structure SQLLIKNAYLITMNADREVYENGSILIENNIIKEVGKFDINIVDKDAEIYDAKGKILMP CCEEEECEEEEEECCCCHHHCCCCEEEECHHHHHHCCCEEEEEECCCEEEECCCCEECC GLVNTHVHLSQQLGRGLADDVVLLTWLRERIWPYESSFNYEDSLISSTACCVELIKSGVT CHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH TFLESGGQYVDAMVEAVDKTGLRACLAKSVMDTGDGLPEAWQKTTDEEINTQLDLFHKFN HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHC NTSNERIKIWFALRTIFNTTEELLVRTKELADKYNTGIHMHIAEIADEISFVKQNNGVGT CCCCCEEEEEEEHHHHHCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCH VEYLDKLGVLGPNLLAAHTVWLTHKEIDLFRLHDVKVSHDPGSAMKVVLGFASIPEMLEK HHHHHHHCCCCCCHHHHEEEEEEECCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC GIPVSIGTDGAPSNNRMDLMRDMYLTSLIHKGRTLNPTVVPAEEVLEMATINGAKCALLE CCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEH KEIGSLEVGKKADMIILNPDTIHCLPMHNPIGNIVYSMTSENVDSTICDGKWLMKERKVL HHCCCCCCCCCCCEEEECCCEEEEEECCCCHHHHEEEECCCCCCCHHCCCHHHHCCCCEE VVDESELLNKVKKQASKIKDKAEVKIPSKFKIIK EECHHHHHHHHHHHHHHCCCCCEEECCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA