| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is recX
Identifier: 126700142
GI number: 126700142
Start: 2918012
End: 2918650
Strand: Direct
Name: recX
Synonym: CD2525
Alternate gene names: 126700142
Gene position: 2918012-2918650 (Clockwise)
Preceding gene: 126700136
Following gene: 126700143
Centisome position: 68.01
GC content: 22.54
Gene sequence:
>639_bases ATGGGTATAATTACAAAAATAGAACAACAAAAAAGAAATGATGATAGAGTTAATATTTATGTAGATGATAAATTTTTTAT TGCTATATTTAAAGAACTTGTTTATACATTTAATTTAAAAAAAGGGAATGAAATAAATGAAGAAGAATTAAAACCTATTT TAGATGATGAAATGTATATAAAAGCTAAAAATAAAGCATTAAATATTTTATCTCATGCTGACCAATCTGAAAAAAAATTA AAAGAAAAACTATCATCAGAATTTGATGAAAATATAATTGAGAGGGTCATAGATTTTCTTAAAAGTTATAATCTCGTAAA TGACAGTGTATTAGCTCAAAAAATTGTTAACACAAATGTTAACCTAAATAAATGTGGCAAAAACAGAATTAAGCAGAATT TATATAATAAAGGTATCAATAGAAGTACAATCAATGAAGCAGTATCTGAATTAGACAAGGACACTGAATTTGAAAATGCT ATGTATCTAGCAAAAAAAAGGTATGAAAGAGTAAAGAAAGAAGATAAAAAGAAAATATATCAAAAAATTTCTCAACATCT TTCCTATAAAGGCTTTGATTATGATATTATTAAAAGAGTTTTAAACAAACTTTTAAATTTTGATGAATACGATATATAA
Upstream 100 bases:
>100_bases TGTCTTAATTTTGATAAAATATAACATACAAATATAAGTTTTTTGTTAAATTTTATTAGTTGCTTTTGTTAATATAATTA CATATAAAAAAGGAGGACTT
Downstream 100 bases:
>100_bases GTATAAATACTAGGGAGGTAAATTATGAAATTAATCATTGGTGGCTTAAGCTTTTTATTAGGATTATATAATATATATCA ATTATACAGAGAAGATAGTA
Product: recombination regulator RecX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MGIITKIEQQKRNDDRVNIYVDDKFFIAIFKELVYTFNLKKGNEINEEELKPILDDEMYIKAKNKALNILSHADQSEKKL KEKLSSEFDENIIERVIDFLKSYNLVNDSVLAQKIVNTNVNLNKCGKNRIKQNLYNKGINRSTINEAVSELDKDTEFENA MYLAKKRYERVKKEDKKKIYQKISQHLSYKGFDYDIIKRVLNKLLNFDEYDI
Sequences:
>Translated_212_residues MGIITKIEQQKRNDDRVNIYVDDKFFIAIFKELVYTFNLKKGNEINEEELKPILDDEMYIKAKNKALNILSHADQSEKKL KEKLSSEFDENIIERVIDFLKSYNLVNDSVLAQKIVNTNVNLNKCGKNRIKQNLYNKGINRSTINEAVSELDKDTEFENA MYLAKKRYERVKKEDKKKIYQKISQHLSYKGFDYDIIKRVLNKLLNFDEYDI >Mature_211_residues GIITKIEQQKRNDDRVNIYVDDKFFIAIFKELVYTFNLKKGNEINEEELKPILDDEMYIKAKNKALNILSHADQSEKKLK EKLSSEFDENIIERVIDFLKSYNLVNDSVLAQKIVNTNVNLNKCGKNRIKQNLYNKGINRSTINEAVSELDKDTEFENAM YLAKKRYERVKKEDKKKIYQKISQHLSYKGFDYDIIKRVLNKLLNFDEYDI
Specific function: Modulates recA activity
COG id: COG2137
COG function: function code R; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recX family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RECX_CLOD6 (Q182L1)
Other databases:
- EMBL: AM180355 - RefSeq: YP_001089039.1 - ProteinModelPortal: Q182L1 - SMR: Q182L1 - STRING: Q182L1 - GeneID: 4915283 - GenomeReviews: AM180355_GR - KEGG: cdf:CD2525 - NMPDR: fig|1496.1.peg.2099 - eggNOG: COG2137 - HOGENOM: HBG417507 - OMA: ERYNIFI - ProtClustDB: PRK00117 - GO: GO:0005737 - HAMAP: MF_01114 - InterPro: IPR003783
Pfam domain/function: PF02631 RecX
EC number: NA
Molecular weight: Translated: 25134; Mature: 25003
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIITKIEQQKRNDDRVNIYVDDKFFIAIFKELVYTFNLKKGNEINEEELKPILDDEMYI CCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHE KAKNKALNILSHADQSEKKLKEKLSSEFDENIIERVIDFLKSYNLVNDSVLAQKIVNTNV EHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC NLNKCGKNRIKQNLYNKGINRSTINEAVSELDKDTEFENAMYLAKKRYERVKKEDKKKIY CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH QKISQHLSYKGFDYDIIKRVLNKLLNFDEYDI HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure GIITKIEQQKRNDDRVNIYVDDKFFIAIFKELVYTFNLKKGNEINEEELKPILDDEMYI CCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHE KAKNKALNILSHADQSEKKLKEKLSSEFDENIIERVIDFLKSYNLVNDSVLAQKIVNTNV EHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC NLNKCGKNRIKQNLYNKGINRSTINEAVSELDKDTEFENAMYLAKKRYERVKKEDKKKIY CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH QKISQHLSYKGFDYDIIKRVLNKLLNFDEYDI HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA