| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is cotJB2 [H]
Identifier: 126700015
GI number: 126700015
Start: 2768726
End: 2768992
Strand: Direct
Name: cotJB2 [H]
Synonym: CD2400
Alternate gene names: 126700015
Gene position: 2768726-2768992 (Clockwise)
Preceding gene: 126700014
Following gene: 126700016
Centisome position: 64.54
GC content: 35.58
Gene sequence:
>267_bases ATGAAAGACTCATCTAGAGCTGAACTTATGAGAAAAGTTCAGGAAACATCTTTTGCATGTGTTGATATGAACTTATATTT AGACAATCACCCTGATGATAAAAATGCTATCAACACTTATAATTCATTATGTAATCAATTTGCGCAAGCTAGATATGCTT ACGAAAATAAATACGGTCCTTTAACTAACTTTGGGTATGCTCCAAGTAGATGCCCTTGGCAATGGGCTGACCAACCTTGG CCTTGGGACAGAGAATTTAATTATTAG
Upstream 100 bases:
>100_bases AATTTGGAACTATATTTCCAGAACTAAACTTACTAGAGTCTGAAATGTACAACAAAGAATTATATGCTAAGCCAAAAAAA TATAGAGGAGGTAGAAGATA
Downstream 100 bases:
>100_bases ACATCAAGTATTGGAGGATTGAAAATTCATGTGGATATATCAGAAAACTATACAACACCCAGTTAATATAAAAACTTGTG ACCCTAGAATGGCTAAATTT
Product: spore-coat protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 88; Mature: 88
Protein sequence:
>88_residues MKDSSRAELMRKVQETSFACVDMNLYLDNHPDDKNAINTYNSLCNQFAQARYAYENKYGPLTNFGYAPSRCPWQWADQPW PWDREFNY
Sequences:
>Translated_88_residues MKDSSRAELMRKVQETSFACVDMNLYLDNHPDDKNAINTYNSLCNQFAQARYAYENKYGPLTNFGYAPSRCPWQWADQPW PWDREFNY >Mature_88_residues MKDSSRAELMRKVQETSFACVDMNLYLDNHPDDKNAINTYNSLCNQFAQARYAYENKYGPLTNFGYAPSRCPWQWADQPW PWDREFNY
Specific function: The cotJ operon proteins affect spore coat composition. They are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016571 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10499; Mature: 10499
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDSSRAELMRKVQETSFACVDMNLYLDNHPDDKNAINTYNSLCNQFAQARYAYENKYGP CCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC LTNFGYAPSRCPWQWADQPWPWDREFNY CCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKDSSRAELMRKVQETSFACVDMNLYLDNHPDDKNAINTYNSLCNQFAQARYAYENKYGP CCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC LTNFGYAPSRCPWQWADQPWPWDREFNY CCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7768848; 9384377 [H]