| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ytvI [H]
Identifier: 126699888
GI number: 126699888
Start: 2635385
End: 2636446
Strand: Direct
Name: ytvI [H]
Synonym: CD2273
Alternate gene names: 126699888
Gene position: 2635385-2636446 (Clockwise)
Preceding gene: 126699877
Following gene: 126699891
Centisome position: 61.43
GC content: 26.84
Gene sequence:
>1062_bases ATGGATATTCAAAAGCAAAAGAATTTTATAATTAAATTTACATATGTAGTTTTAATAACAAGTATTGTATATATTGTATT AAAATTCTTATTGCCATTATTAATGCCTTTTGTAATCAGTTTTATCATTGCATCCATCTTAAGACCTATTATAAGACTTA TTACAAATAATACAAATTTAAATCGTACACTTATTTCTATAGTAATACTTTTAATTTTTTATGGGTTGTGTATATTTTTA TTAGTTAGCTTTGGTGTGAAGATATTTGCAAGTGTAAGTGATGTATTTTTTAGACTTCCTGAAATATATAAATCAAGTAT ACAACCAACGCTAAATACTTTATTTTCAAAGATAGATGCTAGTACACCTAATGTTAACCTAGCATTAATACTTGGTTGGG ATAATATAAGTCAATCTATGATGTCTTTAGTAGCTTCTATTTCAACAAATGCACTCAATGCTATTGCTAGTATTGCAAGT AAAACACCTGCATTTATGTTAAAACTTATTATTACTTTAATTGCTTCTTTTTTCTTTACTTTTGACTATCAAAAAATAGT AAACTTTATCTTAAAACAATTTCCAGAAAAAAGTCAATTTATGATAATAAATATAAAAAATAGCAGTATTAATGCTCTTT TAAAACTACTAAAAGCCTATGCAATACTACTATCAGTGACATTCATAGAACTACTTATTGGACTTACTATCCTAAAGGTT GAAAATGCATTTACTATATCTGTCATCATAGCACTTGTTGATATTTTGCCAGTCTTGGGTACAGGAAGTATTTTGACACC TTGGATGATTATCTCACTCATTAATGGAAATATTAATTTAGCAATAGGACTTTTAATACTATACATAATTATAACCGTTG TTAGACAAATATTAGAACCAAAGGTAGTAGGACACCAAATTGGCCTATATCCTTTAATAACATTAATGTGTATGTTTGTT GGAGCTCAACTATTTGGAATAGCTGGATTATTTGGATTCCCTATCGCAGCTACAATCATAAAAAACTTACATGATAATGG GATTATTACTGCATTTAAATAG
Upstream 100 bases:
>100_bases TTACATAAGCTTTATAGTTTATAATCAATATACAGTAGTATATTTTCTGTAAAAAAGACCATATTTAGAATAATATCAAA TACATTGGAGGTTTTATATT
Downstream 100 bases:
>100_bases TTTAACCTTGACATTTTTATTTAAATTAAAAAGGGCTTTCTCAAATAGGGATAAGCTCTTTTTAATTATTAAAATGATGA AAATACATTTGATTTTATAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MDIQKQKNFIIKFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIRLITNNTNLNRTLISIVILLIFYGLCIFL LVSFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDASTPNVNLALILGWDNISQSMMSLVASISTNALNAIASIAS KTPAFMLKLIITLIASFFFTFDYQKIVNFILKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFIELLIGLTILKV ENAFTISVIIALVDILPVLGTGSILTPWMIISLINGNINLAIGLLILYIIITVVRQILEPKVVGHQIGLYPLITLMCMFV GAQLFGIAGLFGFPIAATIIKNLHDNGIITAFK
Sequences:
>Translated_353_residues MDIQKQKNFIIKFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIRLITNNTNLNRTLISIVILLIFYGLCIFL LVSFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDASTPNVNLALILGWDNISQSMMSLVASISTNALNAIASIAS KTPAFMLKLIITLIASFFFTFDYQKIVNFILKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFIELLIGLTILKV ENAFTISVIIALVDILPVLGTGSILTPWMIISLINGNINLAIGLLILYIIITVVRQILEPKVVGHQIGLYPLITLMCMFV GAQLFGIAGLFGFPIAATIIKNLHDNGIITAFK >Mature_353_residues MDIQKQKNFIIKFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIRLITNNTNLNRTLISIVILLIFYGLCIFL LVSFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDASTPNVNLALILGWDNISQSMMSLVASISTNALNAIASIAS KTPAFMLKLIITLIASFFFTFDYQKIVNFILKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFIELLIGLTILKV ENAFTISVIIALVDILPVLGTGSILTPWMIISLINGNINLAIGLLILYIIITVVRQILEPKVVGHQIGLYPLITLMCMFV GAQLFGIAGLFGFPIAATIIKNLHDNGIITAFK
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014227 - InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 39152; Mature: 39152
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIQKQKNFIIKFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIRLITNNTNL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NRTLISIVILLIFYGLCIFLLVSFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC STPNVNLALILGWDNISQSMMSLVASISTNALNAIASIASKTPAFMLKLIITLIASFFFT CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH FDYQKIVNFILKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFIELLIGLTILKV HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENAFTISVIIALVDILPVLGTGSILTPWMIISLINGNINLAIGLLILYIIITVVRQILEP CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC KVVGHQIGLYPLITLMCMFVGAQLFGIAGLFGFPIAATIIKNLHDNGIITAFK HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC >Mature Secondary Structure MDIQKQKNFIIKFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIRLITNNTNL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NRTLISIVILLIFYGLCIFLLVSFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC STPNVNLALILGWDNISQSMMSLVASISTNALNAIASIASKTPAFMLKLIITLIASFFFT CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH FDYQKIVNFILKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFIELLIGLTILKV HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENAFTISVIIALVDILPVLGTGSILTPWMIISLINGNINLAIGLLILYIIITVVRQILEP CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC KVVGHQIGLYPLITLMCMFVGAQLFGIAGLFGFPIAATIIKNLHDNGIITAFK HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]