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The map label for this gene is yclF [H]

Identifier: 126699877

GI number: 126699877

Start: 2617378

End: 2618760

Strand: Direct

Name: yclF [H]

Synonym: CD2260

Alternate gene names: 126699877

Gene position: 2617378-2618760 (Clockwise)

Preceding gene: 126699874

Following gene: 126699888

Centisome position: 61.01

GC content: 31.02

Gene sequence:

>1383_bases
ATGTCAGTTTTAAAAACGCAAGAAAAACTTAAACAACCTAGAGATTTATATTTCTGCTGTTCAATATTTACCTTTGTAGG
ACTTGCATACTATGGTATGAAATTGGTATTATTATTGTTTTTAGCTGAACAAGTCTCCAAAGGTGGTTTAGGGTTAACAC
CAGCAGAATCCGCATCAATGCTTGCATCTTTTTTAGCATGGACTTATTTCTCTCCAGTTATTGGTGGATGGGTCAGTGAT
AGATTTTTAGGTCCCAAAAACTGTATTATACTTGGAATGCTAATGGTTTCAATTGGTTATTTTCTAGGATACATAGCAAA
TAGTAAGATGGATATAAACATCATGATATTTTTATCTGGATTAGGAATAGGTTTTTATAAAGGAAACTTACATACTATGG
TTGGAAACTTATATACCAATGATGACCCAAGAAAAGATGGAGCTTTCTCTATTACGTATATGGCTACTAATCTAGGTACT
TTATTTGGCCCTTTAATATGCGGTTTAGTTGCTAATGAATGGTTTGCTATGAAAAGCGGATTATCTATAAGTATGTATGG
ATATAGATATGTATTTTTATTTTCATCAATTACGGTTCTAATAGGTTTATTCTTCTTTATATTTGGAAACAGAAAGTTTT
ATAAACCTTTGAATAATGACCCTATTAACGGGAGAGAGTCTATAAGAAAATCACTAGAATATAAGAAAATGCTCGCTTCA
AGACCTTTAACTTTGATTGAGAAAAAAAGAATAATAGTAATATTGGTGTTAGCTTTTTTCACAGTATTTTTTTGGATAGC
ATATAACCAAGCCTCTATGTCTATTGCACTCTATACAAAGGAACACATAAATCTTACTGTTGGCAATTTTCAAATTCCTA
CTTCATGGATAGATTCATACAATGGTCTCCTTTGTGTTATTCTTGGACCTATCTCTGCTTTAGTATGGGTAAAATTATCT
CAAACTAAAAAAGGCGATTTAAGTGTGCCAAAAAAAATGAGCTTAGGTTTTATACTATTAGCCATAGCATTTTTGTTTAT
GATAGTAGCAGTTATACAAACAGGAACAGACCCTAATTCAATTCACAAAGCAAGTGTATTTTGGGTAGTTGGATTTTTAA
CATTCCAAAGTATAGGAGAAATTTGCTTTTCTCCAGTCGGGTATGGTATGGTAAATAAACTTTCGCCTGAAAAGTATATT
TCATTACTAATGGGTGTTTGGTTTTTAGGCAAATTTGCAGCAAATAAATTATCTGGCTATACGCAAGCTATTATAGACCA
ACTTGGTATGTTACAAGTCTTCATAGTGATACCATCATTTTTATTGATATTTGGAATTATACTACTTATAATGAATAAAA
AATTAGTAGAATTATCAAATTAA

Upstream 100 bases:

>100_bases
AATTAAATTATCTTACAAGTTGACGTCTATATGAAAAAAACATATACTCATATAGTATGGTAAAATTTTGTTAAACTATT
TATCTGGAGGTTCTCGACAT

Downstream 100 bases:

>100_bases
AAATTTTTTAAAGTTAATAAAATATACAATAAAAAATCGAGGCATTATAATACCTCGATTTTTATTGTATCTAGTACAAA
CTATATAGCTCTAGTGTAAA

Product: proton-dependent oligopeptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MSVLKTQEKLKQPRDLYFCCSIFTFVGLAYYGMKLVLLLFLAEQVSKGGLGLTPAESASMLASFLAWTYFSPVIGGWVSD
RFLGPKNCIILGMLMVSIGYFLGYIANSKMDINIMIFLSGLGIGFYKGNLHTMVGNLYTNDDPRKDGAFSITYMATNLGT
LFGPLICGLVANEWFAMKSGLSISMYGYRYVFLFSSITVLIGLFFFIFGNRKFYKPLNNDPINGRESIRKSLEYKKMLAS
RPLTLIEKKRIIVILVLAFFTVFFWIAYNQASMSIALYTKEHINLTVGNFQIPTSWIDSYNGLLCVILGPISALVWVKLS
QTKKGDLSVPKKMSLGFILLAIAFLFMIVAVIQTGTDPNSIHKASVFWVVGFLTFQSIGEICFSPVGYGMVNKLSPEKYI
SLLMGVWFLGKFAANKLSGYTQAIIDQLGMLQVFIVIPSFLLIFGIILLIMNKKLVELSN

Sequences:

>Translated_460_residues
MSVLKTQEKLKQPRDLYFCCSIFTFVGLAYYGMKLVLLLFLAEQVSKGGLGLTPAESASMLASFLAWTYFSPVIGGWVSD
RFLGPKNCIILGMLMVSIGYFLGYIANSKMDINIMIFLSGLGIGFYKGNLHTMVGNLYTNDDPRKDGAFSITYMATNLGT
LFGPLICGLVANEWFAMKSGLSISMYGYRYVFLFSSITVLIGLFFFIFGNRKFYKPLNNDPINGRESIRKSLEYKKMLAS
RPLTLIEKKRIIVILVLAFFTVFFWIAYNQASMSIALYTKEHINLTVGNFQIPTSWIDSYNGLLCVILGPISALVWVKLS
QTKKGDLSVPKKMSLGFILLAIAFLFMIVAVIQTGTDPNSIHKASVFWVVGFLTFQSIGEICFSPVGYGMVNKLSPEKYI
SLLMGVWFLGKFAANKLSGYTQAIIDQLGMLQVFIVIPSFLLIFGIILLIMNKKLVELSN
>Mature_459_residues
SVLKTQEKLKQPRDLYFCCSIFTFVGLAYYGMKLVLLLFLAEQVSKGGLGLTPAESASMLASFLAWTYFSPVIGGWVSDR
FLGPKNCIILGMLMVSIGYFLGYIANSKMDINIMIFLSGLGIGFYKGNLHTMVGNLYTNDDPRKDGAFSITYMATNLGTL
FGPLICGLVANEWFAMKSGLSISMYGYRYVFLFSSITVLIGLFFFIFGNRKFYKPLNNDPINGRESIRKSLEYKKMLASR
PLTLIEKKRIIVILVLAFFTVFFWIAYNQASMSIALYTKEHINLTVGNFQIPTSWIDSYNGLLCVILGPISALVWVKLSQ
TKKGDLSVPKKMSLGFILLAIAFLFMIVAVIQTGTDPNSIHKASVFWVVGFLTFQSIGEICFSPVGYGMVNKLSPEKYIS
LLMGVWFLGKFAANKLSGYTQAIIDQLGMLQVFIVIPSFLLIFGIILLIMNKKLVELSN

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Escherichia coli, GI1787922, Length=498, Percent_Identity=27.1084337349398, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1790572, Length=448, Percent_Identity=25, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1789911, Length=479, Percent_Identity=25.678496868476, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1786927, Length=462, Percent_Identity=23.3766233766234, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 51351; Mature: 51220

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLKTQEKLKQPRDLYFCCSIFTFVGLAYYGMKLVLLLFLAEQVSKGGLGLTPAESASM
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LASFLAWTYFSPVIGGWVSDRFLGPKNCIILGMLMVSIGYFLGYIANSKMDINIMIFLSG
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
LGIGFYKGNLHTMVGNLYTNDDPRKDGAFSITYMATNLGTLFGPLICGLVANEWFAMKSG
CCEEEEECCHHHHCCHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
LSISMYGYRYVFLFSSITVLIGLFFFIFGNRKFYKPLNNDPINGRESIRKSLEYKKMLAS
CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHH
RPLTLIEKKRIIVILVLAFFTVFFWIAYNQASMSIALYTKEHINLTVGNFQIPTSWIDSY
CCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEECCEECCHHHHCCC
NGLLCVILGPISALVWVKLSQTKKGDLSVPKKMSLGFILLAIAFLFMIVAVIQTGTDPNS
CCEEEEHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
IHKASVFWVVGFLTFQSIGEICFSPVGYGMVNKLSPEKYISLLMGVWFLGKFAANKLSGY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TQAIIDQLGMLQVFIVIPSFLLIFGIILLIMNKKLVELSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
>Mature Secondary Structure 
SVLKTQEKLKQPRDLYFCCSIFTFVGLAYYGMKLVLLLFLAEQVSKGGLGLTPAESASM
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LASFLAWTYFSPVIGGWVSDRFLGPKNCIILGMLMVSIGYFLGYIANSKMDINIMIFLSG
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
LGIGFYKGNLHTMVGNLYTNDDPRKDGAFSITYMATNLGTLFGPLICGLVANEWFAMKSG
CCEEEEECCHHHHCCHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
LSISMYGYRYVFLFSSITVLIGLFFFIFGNRKFYKPLNNDPINGRESIRKSLEYKKMLAS
CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHH
RPLTLIEKKRIIVILVLAFFTVFFWIAYNQASMSIALYTKEHINLTVGNFQIPTSWIDSY
CCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEECCEECCHHHHCCC
NGLLCVILGPISALVWVKLSQTKKGDLSVPKKMSLGFILLAIAFLFMIVAVIQTGTDPNS
CCEEEEHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
IHKASVFWVVGFLTFQSIGEICFSPVGYGMVNKLSPEKYISLLMGVWFLGKFAANKLSGY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TQAIIDQLGMLQVFIVIPSFLLIFGIILLIMNKKLVELSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]