| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699840
Identifier: 126699840
GI number: 126699840
Start: 2574631
End: 2575125
Strand: Direct
Name: 126699840
Synonym: CD2223
Alternate gene names: NA
Gene position: 2574631-2575125 (Clockwise)
Preceding gene: 126699839
Following gene: 126699841
Centisome position: 60.01
GC content: 32.12
Gene sequence:
>495_bases GTGTGTATTTTTTTCTCTTTTTTTTTGAAATTTATCGAAGATTTAACGCCCTCCCACCGTGATAGGAGTAAGCAAGGTTA TTTAACTCCTTGCGATGGAAAGACAATTGAACATCAATTCGACAGTTTCTGTAAAACAGTTTTGCGTAACTATGCTAGAG ATATTTATGACGAAAATAAACGCAGAAATGATTATTTGGTATCTCTCGAATCTTTGTCACTTGCAGAATTAAGTAAATTG AGTATTTTAGATGATTATGATTCTAACTACATCTGTATGGTTTCTTACGACTACAACATACGAATTGAAGATGTATTAAT GGCGCAAGCAATCGGAAAACTTACAAAAAGAAAACAAGATATAATTCTACTTTCATTCTTTCTCAACATGACAAATGCTG ACATAGCAACATTGATGGATTTAGCAGAAAATACCATACATTATCACAAAACAAATACACTAAAAGAGTTGAAAGAACTC ATGCAGGAACATTGA
Upstream 100 bases:
>100_bases CTAGCCAATGCATATTTCCATACATCAATATGGTGGTGGCTTACAACCAATATAAATTAAATACGTTTTAAAGAATACAC ATTTTTGCCCTATAGGCAGA
Downstream 100 bases:
>100_bases AATGAAACCTACTAAAGAAGTATTACCTTTTACAATTATTTTACTTGCTGTACATGGCGATGTAAATGCAATAAACGTAA TACTTAAACATTTTGAACAC
Product: conjugative transposon protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MCIFFSFFLKFIEDLTPSHRDRSKQGYLTPCDGKTIEHQFDSFCKTVLRNYARDIYDENKRRNDYLVSLESLSLAELSKL SILDDYDSNYICMVSYDYNIRIEDVLMAQAIGKLTKRKQDIILLSFFLNMTNADIATLMDLAENTIHYHKTNTLKELKEL MQEH
Sequences:
>Translated_164_residues MCIFFSFFLKFIEDLTPSHRDRSKQGYLTPCDGKTIEHQFDSFCKTVLRNYARDIYDENKRRNDYLVSLESLSLAELSKL SILDDYDSNYICMVSYDYNIRIEDVLMAQAIGKLTKRKQDIILLSFFLNMTNADIATLMDLAENTIHYHKTNTLKELKEL MQEH >Mature_164_residues MCIFFSFFLKFIEDLTPSHRDRSKQGYLTPCDGKTIEHQFDSFCKTVLRNYARDIYDENKRRNDYLVSLESLSLAELSKL SILDDYDSNYICMVSYDYNIRIEDVLMAQAIGKLTKRKQDIILLSFFLNMTNADIATLMDLAENTIHYHKTNTLKELKEL MQEH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19332; Mature: 19332
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCIFFSFFLKFIEDLTPSHRDRSKQGYLTPCDGKTIEHQFDSFCKTVLRNYARDIYDENK CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC RRNDYLVSLESLSLAELSKLSILDDYDSNYICMVSYDYNIRIEDVLMAQAIGKLTKRKQD CCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEHHHHHHHHHHHHHHHHHHH IILLSFFLNMTNADIATLMDLAENTIHYHKTNTLKELKELMQEH HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC >Mature Secondary Structure MCIFFSFFLKFIEDLTPSHRDRSKQGYLTPCDGKTIEHQFDSFCKTVLRNYARDIYDENK CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC RRNDYLVSLESLSLAELSKLSILDDYDSNYICMVSYDYNIRIEDVLMAQAIGKLTKRKQD CCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEHHHHHHHHHHHHHHHHHHH IILLSFFLNMTNADIATLMDLAENTIHYHKTNTLKELKELMQEH HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA