| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699839
Identifier: 126699839
GI number: 126699839
Start: 2573007
End: 2573933
Strand: Direct
Name: 126699839
Synonym: CD2222
Alternate gene names: NA
Gene position: 2573007-2573933 (Clockwise)
Preceding gene: 126699837
Following gene: 126699840
Centisome position: 59.97
GC content: 31.39
Gene sequence:
>927_bases ATGAGTGATATTTTAAGTAGAATTACAAATAAAATTGGGGATAAGAATATAGTTGATAAGTTATCAGCTCTATCAAAATC AGATTTGAACTCACTTCTATTAGAAGTGTTTGATAGACAAGCAAATACTTTAACTGCAACTGATATTCTAAAGTCATACC AACTAAATAGATTTACTATCCCTAGCGGTATAGATCCAGAAGAAATTCATGCTTTGGAATCAAAATTATTGAGAAAAGCA TTCAATATGGATATCAAGACGATTATGCTTTCTCCCTCTGCCCCATTAGGTAGCTGTAGCGTTTTTGGCTCCGTAGATCA ATATAACGTAGTAAGTGCTCTACGAGGGACAGAAACACTTGCAGACCCCTCAAATATGTTGGCAATAATTATTGCTGATA AATTAAAAAGAAAAGAAGAAAATAATACCATACCTATCCACATGGCTACTACTGCTAGGGTAATAAGAGCACAAAATTTT GTAGGTAAAGGTTTATATTCACATTTTGGCTTATATTGTATGGTTTCATCTGGTATAGATACAGGGTCTTACACTTGTGA AAAAATGTTGTTAGAAAAGCACTTAAACTATTATAAAGATATATTAAGTGAAATAGAAAATGTTCGTTTCTCTATTATTC TACGCAAAAGAAACGGATACAAAGATAATGACGGATTTTTCGACAGAATGGTTGAAACTATCAAACTTATTTTTCCTAAT ATAGAGTTATCAATTCATAATGATGATGTTGATAATAATTATTATAAAGGTATCAATTTCAAATTATCGGTCAAACAAGG AAATGAAACCGTTGAAATAGTTGACGGTGGATTTGTTGACTGGACTTATCAAATGCTTGGAAATAAAAAAGAACGCTGTT TGATAAGTGGTATTGGCTTAGAAAGATTTCTTGTAGCTGTTTCATAA
Upstream 100 bases:
>100_bases AGTAAATATTCAGTGTTTTTTCATTTTTGGTCAAATGACCTAGATTAGTTGTTGTAACAATTCTATAATTATTTTGAAAG TAACAGTATGGAGGATAACT
Downstream 100 bases:
>100_bases AAGGAGAAGAAAAATGGAACTTATAGAGTGGAATTATGCTTATATTACCGATTTAGTTGAGTTTGCGAATGATAAAGAAA TTGCAAACAATCTTCGTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MSDILSRITNKIGDKNIVDKLSALSKSDLNSLLLEVFDRQANTLTATDILKSYQLNRFTIPSGIDPEEIHALESKLLRKA FNMDIKTIMLSPSAPLGSCSVFGSVDQYNVVSALRGTETLADPSNMLAIIIADKLKRKEENNTIPIHMATTARVIRAQNF VGKGLYSHFGLYCMVSSGIDTGSYTCEKMLLEKHLNYYKDILSEIENVRFSIILRKRNGYKDNDGFFDRMVETIKLIFPN IELSIHNDDVDNNYYKGINFKLSVKQGNETVEIVDGGFVDWTYQMLGNKKERCLISGIGLERFLVAVS
Sequences:
>Translated_308_residues MSDILSRITNKIGDKNIVDKLSALSKSDLNSLLLEVFDRQANTLTATDILKSYQLNRFTIPSGIDPEEIHALESKLLRKA FNMDIKTIMLSPSAPLGSCSVFGSVDQYNVVSALRGTETLADPSNMLAIIIADKLKRKEENNTIPIHMATTARVIRAQNF VGKGLYSHFGLYCMVSSGIDTGSYTCEKMLLEKHLNYYKDILSEIENVRFSIILRKRNGYKDNDGFFDRMVETIKLIFPN IELSIHNDDVDNNYYKGINFKLSVKQGNETVEIVDGGFVDWTYQMLGNKKERCLISGIGLERFLVAVS >Mature_307_residues SDILSRITNKIGDKNIVDKLSALSKSDLNSLLLEVFDRQANTLTATDILKSYQLNRFTIPSGIDPEEIHALESKLLRKAF NMDIKTIMLSPSAPLGSCSVFGSVDQYNVVSALRGTETLADPSNMLAIIIADKLKRKEENNTIPIHMATTARVIRAQNFV GKGLYSHFGLYCMVSSGIDTGSYTCEKMLLEKHLNYYKDILSEIENVRFSIILRKRNGYKDNDGFFDRMVETIKLIFPNI ELSIHNDDVDNNYYKGINFKLSVKQGNETVEIVDGGFVDWTYQMLGNKKERCLISGIGLERFLVAVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34658; Mature: 34527
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDILSRITNKIGDKNIVDKLSALSKSDLNSLLLEVFDRQANTLTATDILKSYQLNRFTI CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEC PSGIDPEEIHALESKLLRKAFNMDIKTIMLSPSAPLGSCSVFGSVDQYNVVSALRGTETL CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEECCCCHHHHHHHHHCCCCC ADPSNMLAIIIADKLKRKEENNTIPIHMATTARVIRAQNFVGKGLYSHFGLYCMVSSGID CCCCCEEEEEEEHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC TGSYTCEKMLLEKHLNYYKDILSEIENVRFSIILRKRNGYKDNDGFFDRMVETIKLIFPN CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC IELSIHNDDVDNNYYKGINFKLSVKQGNETVEIVDGGFVDWTYQMLGNKKERCLISGIGL EEEEEECCCCCCCEECCCEEEEEEECCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCH ERFLVAVS HHEEEECC >Mature Secondary Structure SDILSRITNKIGDKNIVDKLSALSKSDLNSLLLEVFDRQANTLTATDILKSYQLNRFTI HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEC PSGIDPEEIHALESKLLRKAFNMDIKTIMLSPSAPLGSCSVFGSVDQYNVVSALRGTETL CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEECCCCHHHHHHHHHCCCCC ADPSNMLAIIIADKLKRKEENNTIPIHMATTARVIRAQNFVGKGLYSHFGLYCMVSSGID CCCCCEEEEEEEHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC TGSYTCEKMLLEKHLNYYKDILSEIENVRFSIILRKRNGYKDNDGFFDRMVETIKLIFPN CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC IELSIHNDDVDNNYYKGINFKLSVKQGNETVEIVDGGFVDWTYQMLGNKKERCLISGIGL EEEEEECCCCCCCEECCCEEEEEEECCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCH ERFLVAVS HHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA