| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is thrB [H]
Identifier: 126699736
GI number: 126699736
Start: 2453135
End: 2454037
Strand: Direct
Name: thrB [H]
Synonym: CD2119
Alternate gene names: 126699736
Gene position: 2453135-2454037 (Clockwise)
Preceding gene: 126699735
Following gene: 126699737
Centisome position: 57.18
GC content: 29.46
Gene sequence:
>903_bases GTGATTATTATGTTAGAGATTATAGTTCCTGCAACAAGTGCTAATATAGGTCCAGGATTTGATTGTCTTGGAATTGCGTT AAATATATACAATAAATTTTATGTTGAAGAAATTGAAAGTGGTCTTGAAATAGAAGGTTGTGAAGATGCTTACAAAAACG AAAATAACTTAGTTTATACATCTATGAAGTACTTTTTTGATAGAGTTAAACCAGAAAAAATACCTGCTGGTATCAAAATA AAAATCCAAAGTGAAGTACCTATATGTAGAGGTCTTGGCAGTAGTGCCTCTTGTATAGTAGCTGGAGTTATAGCTGCAAA TGCTCTATCAGGTGCTAATTTAGATAAAAATCAATTACTAAATATAGCTTCAGAAATAGAAGGTCACCCAGATAATGTTG CTCCTGCTATTTTAGGAAATATGATTGTATCTGTTACTGATAATGAGAATATACATTATGATATTATAAAAATTCCTGAA GAACTTAAATTTTGTGCAATGATACCTAATTTTAAGTTATCAACAGAAAAAGCTAGAGGTGTTTTACCAAAGGAAATACC ATATTCTGATGGGGTATTCAATGTTAGTAGAGTTGCTTTACTAATATCTGCCTTACTAAACAAAAACTTTGACCTACTTA AAGTAGCTTGTCAAGACAAATTGCATCAAGATTATAGAGGAACTCTAATTGAGAACTACAATGATATTGTTGAAAAATCT GAACAATTAAATAGTATTGGAGTATTTTTAAGTGGAGCTGGACCTACTATAATGTCTTTAATAAAAGAAAATGATGATAG TTTTGTGGATAATATGAAAAATTACCTACAAAAACTAAAATCTGATTGGGAAATAAAAGAGTTATGTTGCGATTCTAATG GAGCTGTTTTAAATATAATATAA
Upstream 100 bases:
>100_bases AAAACCTATTAAAAATCTTAAAAATGCAGAAATACTACATAAAGATATTTATGAAAAAGATGAATTAAAACTAGCTATAA AAAAATTCTTAAAGGTATAG
Downstream 100 bases:
>100_bases TTATCGTCTTCTATACAAAATATAACTACTCTTTTATTATAATTTGTAGTATAATAATTAGGACTAGGTAATAATATTAA GTATTATAATCTAGTTCTTT
Product: homoserine kinase
Products: NA
Alternate protein names: HK; HSK [H]
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MIIMLEIIVPATSANIGPGFDCLGIALNIYNKFYVEEIESGLEIEGCEDAYKNENNLVYTSMKYFFDRVKPEKIPAGIKI KIQSEVPICRGLGSSASCIVAGVIAANALSGANLDKNQLLNIASEIEGHPDNVAPAILGNMIVSVTDNENIHYDIIKIPE ELKFCAMIPNFKLSTEKARGVLPKEIPYSDGVFNVSRVALLISALLNKNFDLLKVACQDKLHQDYRGTLIENYNDIVEKS EQLNSIGVFLSGAGPTIMSLIKENDDSFVDNMKNYLQKLKSDWEIKELCCDSNGAVLNII
Sequences:
>Translated_300_residues MIIMLEIIVPATSANIGPGFDCLGIALNIYNKFYVEEIESGLEIEGCEDAYKNENNLVYTSMKYFFDRVKPEKIPAGIKI KIQSEVPICRGLGSSASCIVAGVIAANALSGANLDKNQLLNIASEIEGHPDNVAPAILGNMIVSVTDNENIHYDIIKIPE ELKFCAMIPNFKLSTEKARGVLPKEIPYSDGVFNVSRVALLISALLNKNFDLLKVACQDKLHQDYRGTLIENYNDIVEKS EQLNSIGVFLSGAGPTIMSLIKENDDSFVDNMKNYLQKLKSDWEIKELCCDSNGAVLNII >Mature_300_residues MIIMLEIIVPATSANIGPGFDCLGIALNIYNKFYVEEIESGLEIEGCEDAYKNENNLVYTSMKYFFDRVKPEKIPAGIKI KIQSEVPICRGLGSSASCIVAGVIAANALSGANLDKNQLLNIASEIEGHPDNVAPAILGNMIVSVTDNENIHYDIIKIPE ELKFCAMIPNFKLSTEKARGVLPKEIPYSDGVFNVSRVALLISALLNKNFDLLKVACQDKLHQDYRGTLIENYNDIVEKS EQLNSIGVFLSGAGPTIMSLIKENDDSFVDNMKNYLQKLKSDWEIKELCCDSNGAVLNII
Specific function: Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate [H]
COG id: COG0083
COG function: function code E; Homoserine kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GHMP kinase family. Homoserine kinase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786184, Length=314, Percent_Identity=28.343949044586, Blast_Score=114, Evalue=7e-27, Organism=Saccharomyces cerevisiae, GI6321814, Length=350, Percent_Identity=32.2857142857143, Blast_Score=162, Evalue=5e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006204 - InterPro: IPR013750 - InterPro: IPR006203 - InterPro: IPR000870 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF08544 GHMP_kinases_C; PF00288 GHMP_kinases_N [H]
EC number: =2.7.1.39 [H]
Molecular weight: Translated: 33028; Mature: 33028
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIMLEIIVPATSANIGPGFDCLGIALNIYNKFYVEEIESGLEIEGCEDAYKNENNLVYT CEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEE SMKYFFDRVKPEKIPAGIKIKIQSEVPICRGLGSSASCIVAGVIAANALSGANLDKNQLL HHHHHHHHCCCCCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH NIASEIEGHPDNVAPAILGNMIVSVTDNENIHYDIIKIPEELKFCAMIPNFKLSTEKARG HHHHHCCCCCCCHHHHHHCCEEEEEECCCCEEEEEEECCCHHHHHHCCCCCEECCHHHCC VLPKEIPYSDGVFNVSRVALLISALLNKNFDLLKVACQDKLHQDYRGTLIENYNDIVEKS CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH EQLNSIGVFLSGAGPTIMSLIKENDDSFVDNMKNYLQKLKSDWEIKELCCDSNGAVLNII HHHCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEC >Mature Secondary Structure MIIMLEIIVPATSANIGPGFDCLGIALNIYNKFYVEEIESGLEIEGCEDAYKNENNLVYT CEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEE SMKYFFDRVKPEKIPAGIKIKIQSEVPICRGLGSSASCIVAGVIAANALSGANLDKNQLL HHHHHHHHCCCCCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH NIASEIEGHPDNVAPAILGNMIVSVTDNENIHYDIIKIPEELKFCAMIPNFKLSTEKARG HHHHHCCCCCCCHHHHHHCCEEEEEECCCCEEEEEEECCCHHHHHHCCCCCEECCHHHCC VLPKEIPYSDGVFNVSRVALLISALLNKNFDLLKVACQDKLHQDYRGTLIENYNDIVEKS CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH EQLNSIGVFLSGAGPTIMSLIKENDDSFVDNMKNYLQKLKSDWEIKELCCDSNGAVLNII HHHCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA