| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699737
Identifier: 126699737
GI number: 126699737
Start: 2454164
End: 2455222
Strand: Direct
Name: 126699737
Synonym: CD2120
Alternate gene names: NA
Gene position: 2454164-2455222 (Clockwise)
Preceding gene: 126699736
Following gene: 126699739
Centisome position: 57.2
GC content: 32.39
Gene sequence:
>1059_bases ATCATAAAAGAGTTAATAATTAGAGATTTAGTTGCAAAAGTTCCTATAATTCAAGGTGGAATGGGCGTTGGTATATCTAG GTCATCACTAGCTGGTGCAGTTGCTAAGCTTGGTGGTGTTGGTGTAATTTCTGGAGTTCAAATTGGATATGATGAGGAAG ATTTTGAAACTAATACTATAAATGCAAATTTAAGAGCTATAAAAAAACATATTTCTAAGGCCAAAGAAATCTCAAATGGT GGTATTATTGGTATTAATTTTATGGTAGCTATGAAAGAATATGAAACATACGTAAAGGAAGCTGTTAAAGCTGGTGTAGA CCTTATAATATCTGGAGCTGGATTACCTAATAAGCTACCATCATTAGTAAAGGGAAGTAATGTAAAAATAGCACCCATAG TTTCAACTGCAAAAGCTGCTAATGTAATTTTAAAAATGTGGGATAGAAAAGAGAAAACTACTGCTGACTTAATAGTTGTT GAAGGTCCAAAAGCTGGTGGTCACCTTGGATACTCTAACGAGGAACTTGATAACATAGATTCTATAGACTATGATAAGGA ATTTGTTGAAATTTTAAAGGTTGCAAATACTTATGGAGAAAAATTTGGTAGAAACATACCAGTAGTTGCTGCTGGTGGTA TAACTTCTAGTAGTGATGTTAAAAAATATATAGATATGGGTGCAAGTGGTGTACAAGTTGGTACAAGATTTGTTGCTACT TACGAATGTGATGCCCATGAGAACTTTAAAATGGCATACATAAATGCTAGTGAAGAAGATGTTCATATAGTTAAAAGTCC TGTAGGTCTTCCTGGACGCGCCATAAGAAACAAATTTATAGAAGAAGTTAAAATAAATCGTCCAGAAATAAAGAAGTGCT ATAATTGTTTGATTCCTTGTAATCCAAAAGAAACTCCTTACTGTATTTCTCAAGCTCTAATCAATGCAGTTAAAGGAGAT GTTGAAAATTCACTTTTATTTTGTGGAAATGATGCCTATAAAATTGATAAATTAAGTACTGTTGAAGATGTTATCAATGA ATTGATTTCTGAATTATAA
Upstream 100 bases:
>100_bases TACTCTTTTATTATAATTTGTAGTATAATAATTAGGACTAGGTAATAATATTAAGTATTATAATCTAGTTCTTTAAACAT GTTTACATTGAGGAGGGATT
Downstream 100 bases:
>100_bases TTTAAAGAAAACTAAATTAAAATTTTATCAAGCTAAGGAGTTTAAATACGTTATTTATTAATCTTTATAAACATATTTAT GTCCTTAGCTTTTTTGTGTC
Product: 2-nitropropane dioxygenase
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 352; Mature: 352
Protein sequence:
>352_residues MIKELIIRDLVAKVPIIQGGMGVGISRSSLAGAVAKLGGVGVISGVQIGYDEEDFETNTINANLRAIKKHISKAKEISNG GIIGINFMVAMKEYETYVKEAVKAGVDLIISGAGLPNKLPSLVKGSNVKIAPIVSTAKAANVILKMWDRKEKTTADLIVV EGPKAGGHLGYSNEELDNIDSIDYDKEFVEILKVANTYGEKFGRNIPVVAAGGITSSSDVKKYIDMGASGVQVGTRFVAT YECDAHENFKMAYINASEEDVHIVKSPVGLPGRAIRNKFIEEVKINRPEIKKCYNCLIPCNPKETPYCISQALINAVKGD VENSLLFCGNDAYKIDKLSTVEDVINELISEL
Sequences:
>Translated_352_residues MIKELIIRDLVAKVPIIQGGMGVGISRSSLAGAVAKLGGVGVISGVQIGYDEEDFETNTINANLRAIKKHISKAKEISNG GIIGINFMVAMKEYETYVKEAVKAGVDLIISGAGLPNKLPSLVKGSNVKIAPIVSTAKAANVILKMWDRKEKTTADLIVV EGPKAGGHLGYSNEELDNIDSIDYDKEFVEILKVANTYGEKFGRNIPVVAAGGITSSSDVKKYIDMGASGVQVGTRFVAT YECDAHENFKMAYINASEEDVHIVKSPVGLPGRAIRNKFIEEVKINRPEIKKCYNCLIPCNPKETPYCISQALINAVKGD VENSLLFCGNDAYKIDKLSTVEDVINELISEL >Mature_352_residues MIKELIIRDLVAKVPIIQGGMGVGISRSSLAGAVAKLGGVGVISGVQIGYDEEDFETNTINANLRAIKKHISKAKEISNG GIIGINFMVAMKEYETYVKEAVKAGVDLIISGAGLPNKLPSLVKGSNVKIAPIVSTAKAANVILKMWDRKEKTTADLIVV EGPKAGGHLGYSNEELDNIDSIDYDKEFVEILKVANTYGEKFGRNIPVVAAGGITSSSDVKKYIDMGASGVQVGTRFVAT YECDAHENFKMAYINASEEDVHIVKSPVGLPGRAIRNKFIEEVKINRPEIKKCYNCLIPCNPKETPYCISQALINAVKGD VENSLLFCGNDAYKIDKLSTVEDVINELISEL
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 37997; Mature: 37997
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: PS00912 DHODEHASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKELIIRDLVAKVPIIQGGMGVGISRSSLAGAVAKLGGVGVISGVQIGYDEEDFETNTI CHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHCCCEEEECEEECCCCCCCCCCEE NANLRAIKKHISKAKEISNGGIIGINFMVAMKEYETYVKEAVKAGVDLIISGAGLPNKLP CHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH SLVKGSNVKIAPIVSTAKAANVILKMWDRKEKTTADLIVVEGPKAGGHLGYSNEELDNID HHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHCCCC SIDYDKEFVEILKVANTYGEKFGRNIPVVAAGGITSSSDVKKYIDMGASGVQVGTRFVAT CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHCEEEEEE YECDAHENFKMAYINASEEDVHIVKSPVGLPGRAIRNKFIEEVKINRPEIKKCYNCLIPC EECCCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCC NPKETPYCISQALINAVKGDVENSLLFCGNDAYKIDKLSTVEDVINELISEL CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHC >Mature Secondary Structure MIKELIIRDLVAKVPIIQGGMGVGISRSSLAGAVAKLGGVGVISGVQIGYDEEDFETNTI CHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHCCCEEEECEEECCCCCCCCCCEE NANLRAIKKHISKAKEISNGGIIGINFMVAMKEYETYVKEAVKAGVDLIISGAGLPNKLP CHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH SLVKGSNVKIAPIVSTAKAANVILKMWDRKEKTTADLIVVEGPKAGGHLGYSNEELDNID HHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHCCCC SIDYDKEFVEILKVANTYGEKFGRNIPVVAAGGITSSSDVKKYIDMGASGVQVGTRFVAT CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHCEEEEEE YECDAHENFKMAYINASEEDVHIVKSPVGLPGRAIRNKFIEEVKINRPEIKKCYNCLIPC EECCCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCC NPKETPYCISQALINAVKGDVENSLLFCGNDAYKIDKLSTVEDVINELISEL CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA