| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699468
Identifier: 126699468
GI number: 126699468
Start: 2150071
End: 2151642
Strand: Direct
Name: 126699468
Synonym: CD1858
Alternate gene names: NA
Gene position: 2150071-2151642 (Clockwise)
Preceding gene: 126699467
Following gene: 126699469
Centisome position: 50.12
GC content: 34.99
Gene sequence:
>1572_bases ATGAAGAATAAAAAGGCTGCGGGAGTAATTCTTGGAGCAGTGCTTTTGATAGTGGGAGTAGTAATCTCTTTATTTGCAGG TAGTAAGATTGTATTTGCACAAGGAGGGTTGTTTACGACACTTGTAAATCCGATAGAAGCCGTTGCTCAAATAAAAGTAG AAGTAGAAGTTAATGTTAAGTATATTTTTGAAGATGAAAAAGTCTTTAAGGAGGAAAAGATTAAGGCTGAAAAGGGGCGG CTTCTTGACAGTGGAGATCTTCCAATAATTCCTGATGATATGAAATTTATAGATGACTTTCTATTTTATGAAGTAAAGGG AGACGGGAAAGATGAAATTATCCGTAAAGTTACAAAGATTGATGTTAAGGATAAGGAAACGCAAACAGAAAATGAAAGCT CAAAATCTGAGCAAAGCTCTCAATCAAATGCTTCAAAGATAGAAAATAAGGGAACTCAAACAGAGCTTAGCAAAGATGAT ATTTCTAAAATGGAAAAGGAGTCTAAGGAACTTAAAGAAAAACTTGATAAGCTAAATCAGGAGATTAAGGACAAGGATAA ACTAAGCGAGAAGCAAAAGGATAAAATCAAAGACCTTGAGGAGAAAATAGATAAACTGAAGGAAAAACTTGAAAAGGGCA AAGATGATAAGGACTTATCAGCAGATATGAAAAAGGAGATAGACAAGCTAACTGATAAGATTAAGGAACTTGAGAAAAAG GCTAATGAGGTCGGTAGAGCTCCTGTTATGCATAATCCTACTGTAACACCAATTAGCCCTATTTCCGGAATTAAACAAGG AACAGGAAATGTATCACCACAAACATCTATAAATAGCAGTGGTAAAGGTTCTGCCACGCAGGAAAGTAAAGGGGCAAATA CAAAAGATACAAACAGCAATGAATCAAAGGAGAAAGAAAAGCAAGTTTGTTATCCAAATAAGCTGACACCAAAACAGCCT GCTAATAATGGTAGTCATGATTCTTCTCTGGATGGTTCAAGTAAGAATATAAATACCAACAAAGGAGTTGCTTCAGAACC TTCAAAGGCACGAGGAACAGTTACTGAAAATAAGGATAATGCAAACAAAAATTATCCTATTCACCATAATGACAGTAAAG ATAATAAAGAAACGGATAAATATTCTGCTGATGCAAGACAGTTTGTTACCTTTACAACTAAAAATGGTAAGACCTTTCAT TTAATCATTAACCATGATGAGGATAGCGAGAAGGTTATGCTCCTAACTGAAGTATCTGAAGATGATCTCTTAAATATGGT AGAAAAGAAAGCACCGGAGAAAGAGATTGTTAAAGAAGAATCACAAAAAGAAGAGCCTAAACAAGTGAAAAAAGAAGAAA GCAGTAATACAGGAACCTACTTAATTCTCATTCTTGTAGTAGCGGGAGCCTTAGGTGCAGGATATTATTTTAAGGTTATT AAGAAAAAAGAAGATAAGGAGCTTGAAGGCTTTGAGGAGGAAGATGATGATTTCTTTTCAGAGGCAGAAGAAAGCGAAAA TGAAGTAAACGAAGCAGTAACAGAAGATAAAGAAGATGATGAGATAGAGTAA
Upstream 100 bases:
>100_bases ATTGCCATTTGCAGAAAAAATAACATTACAATTTCTGATCTTATGGTAAAAGTAAACAGAGAAAAATCAGAAATGAAAAA GGAGAACGGAAATGAAAAAA
Downstream 100 bases:
>100_bases ACTTGTACCCAAAATTATATAATATTTGGGGCAAAACACAGGGCGAGAGAGTAAAATCTTTCGCCCTCTTATATTGAAAA CAGGAGGAAAACTATATGAA
Product: cell surface protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 523; Mature: 523
Protein sequence:
>523_residues MKNKKAAGVILGAVLLIVGVVISLFAGSKIVFAQGGLFTTLVNPIEAVAQIKVEVEVNVKYIFEDEKVFKEEKIKAEKGR LLDSGDLPIIPDDMKFIDDFLFYEVKGDGKDEIIRKVTKIDVKDKETQTENESSKSEQSSQSNASKIENKGTQTELSKDD ISKMEKESKELKEKLDKLNQEIKDKDKLSEKQKDKIKDLEEKIDKLKEKLEKGKDDKDLSADMKKEIDKLTDKIKELEKK ANEVGRAPVMHNPTVTPISPISGIKQGTGNVSPQTSINSSGKGSATQESKGANTKDTNSNESKEKEKQVCYPNKLTPKQP ANNGSHDSSLDGSSKNINTNKGVASEPSKARGTVTENKDNANKNYPIHHNDSKDNKETDKYSADARQFVTFTTKNGKTFH LIINHDEDSEKVMLLTEVSEDDLLNMVEKKAPEKEIVKEESQKEEPKQVKKEESSNTGTYLILILVVAGALGAGYYFKVI KKKEDKELEGFEEEDDDFFSEAEESENEVNEAVTEDKEDDEIE
Sequences:
>Translated_523_residues MKNKKAAGVILGAVLLIVGVVISLFAGSKIVFAQGGLFTTLVNPIEAVAQIKVEVEVNVKYIFEDEKVFKEEKIKAEKGR LLDSGDLPIIPDDMKFIDDFLFYEVKGDGKDEIIRKVTKIDVKDKETQTENESSKSEQSSQSNASKIENKGTQTELSKDD ISKMEKESKELKEKLDKLNQEIKDKDKLSEKQKDKIKDLEEKIDKLKEKLEKGKDDKDLSADMKKEIDKLTDKIKELEKK ANEVGRAPVMHNPTVTPISPISGIKQGTGNVSPQTSINSSGKGSATQESKGANTKDTNSNESKEKEKQVCYPNKLTPKQP ANNGSHDSSLDGSSKNINTNKGVASEPSKARGTVTENKDNANKNYPIHHNDSKDNKETDKYSADARQFVTFTTKNGKTFH LIINHDEDSEKVMLLTEVSEDDLLNMVEKKAPEKEIVKEESQKEEPKQVKKEESSNTGTYLILILVVAGALGAGYYFKVI KKKEDKELEGFEEEDDDFFSEAEESENEVNEAVTEDKEDDEIE >Mature_523_residues MKNKKAAGVILGAVLLIVGVVISLFAGSKIVFAQGGLFTTLVNPIEAVAQIKVEVEVNVKYIFEDEKVFKEEKIKAEKGR LLDSGDLPIIPDDMKFIDDFLFYEVKGDGKDEIIRKVTKIDVKDKETQTENESSKSEQSSQSNASKIENKGTQTELSKDD ISKMEKESKELKEKLDKLNQEIKDKDKLSEKQKDKIKDLEEKIDKLKEKLEKGKDDKDLSADMKKEIDKLTDKIKELEKK ANEVGRAPVMHNPTVTPISPISGIKQGTGNVSPQTSINSSGKGSATQESKGANTKDTNSNESKEKEKQVCYPNKLTPKQP ANNGSHDSSLDGSSKNINTNKGVASEPSKARGTVTENKDNANKNYPIHHNDSKDNKETDKYSADARQFVTFTTKNGKTFH LIINHDEDSEKVMLLTEVSEDDLLNMVEKKAPEKEIVKEESQKEEPKQVKKEESSNTGTYLILILVVAGALGAGYYFKVI KKKEDKELEGFEEEDDDFFSEAEESENEVNEAVTEDKEDDEIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58395; Mature: 58395
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNKKAAGVILGAVLLIVGVVISLFAGSKIVFAQGGLFTTLVNPIEAVAQIKVEVEVNVK CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHEEEEEEEEEEE YIFEDEKVFKEEKIKAEKGRLLDSGDLPIIPDDMKFIDDFLFYEVKGDGKDEIIRKVTKI EEECCHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHEEEECCCCHHHHHHHHHHC DVKDKETQTENESSKSEQSSQSNASKIENKGTQTELSKDDISKMEKESKELKEKLDKLNQ CCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH EIKDKDKLSEKQKDKIKDLEEKIDKLKEKLEKGKDDKDLSADMKKEIDKLTDKIKELEKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ANEVGRAPVMHNPTVTPISPISGIKQGTGNVSPQTSINSSGKGSATQESKGANTKDTNSN HHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ESKEKEKQVCYPNKLTPKQPANNGSHDSSLDGSSKNINTNKGVASEPSKARGTVTENKDN CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ANKNYPIHHNDSKDNKETDKYSADARQFVTFTTKNGKTFHLIINHDEDSEKVMLLTEVSE CCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEECCH DDLLNMVEKKAPEKEIVKEESQKEEPKQVKKEESSNTGTYLILILVVAGALGAGYYFKVI HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH KKKEDKELEGFEEEDDDFFSEAEESENEVNEAVTEDKEDDEIE HCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKNKKAAGVILGAVLLIVGVVISLFAGSKIVFAQGGLFTTLVNPIEAVAQIKVEVEVNVK CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHEEEEEEEEEEE YIFEDEKVFKEEKIKAEKGRLLDSGDLPIIPDDMKFIDDFLFYEVKGDGKDEIIRKVTKI EEECCHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHEEEECCCCHHHHHHHHHHC DVKDKETQTENESSKSEQSSQSNASKIENKGTQTELSKDDISKMEKESKELKEKLDKLNQ CCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH EIKDKDKLSEKQKDKIKDLEEKIDKLKEKLEKGKDDKDLSADMKKEIDKLTDKIKELEKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ANEVGRAPVMHNPTVTPISPISGIKQGTGNVSPQTSINSSGKGSATQESKGANTKDTNSN HHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ESKEKEKQVCYPNKLTPKQPANNGSHDSSLDGSSKNINTNKGVASEPSKARGTVTENKDN CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ANKNYPIHHNDSKDNKETDKYSADARQFVTFTTKNGKTFHLIINHDEDSEKVMLLTEVSE CCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEECCH DDLLNMVEKKAPEKEIVKEESQKEEPKQVKKEESSNTGTYLILILVVAGALGAGYYFKVI HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH KKKEDKELEGFEEEDDDFFSEAEESENEVNEAVTEDKEDDEIE HCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA