| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is aroF [H]
Identifier: 126699441
GI number: 126699441
Start: 2121258
End: 2122271
Strand: Direct
Name: aroF [H]
Synonym: CD1832
Alternate gene names: 126699441
Gene position: 2121258-2122271 (Clockwise)
Preceding gene: 126699440
Following gene: 126699442
Centisome position: 49.44
GC content: 32.54
Gene sequence:
>1014_bases ATGATAGTAGTATTAAAAATGGGAGCAGATAAAAATGAAGTTAAAAAATTAATTGAGGCTATTGGGAGAGAAGGAGTAGA AGTTAATCCCATAGATGGAACAGAATTAACTGTTTTAGGTTTAGTTGGAGATACTAGTAAAATAGATGCCAAAAGAATAG AAGCAAATAAGGTAGTTGAAAAAGTTATGCATGTGGTAGAGCCTTTTAAAAAGGCCAATAGAAAATTTCATCCAGAACCT TCAATCATAAATGTTAATGGAATGGAAATTGGTTCAAAGAAAATTGCTATGATAGCTGGGCCTTGTTCTGTTGAAACAGA AGACCAAATAGTATCTATAGCTAAAGATGTGAAAAAATCAGGTGCAGGATTTTTGAGAGGTGGAGCATTCAAACCAAGAA CATCACCATACGCTTTCCAAGGATTGAAATATGATGGATTGGATTTATTAAAAAAAGCAAAAGAAAAAACAGGGCTTCCT ATAGTTACAGAAATAATGTCAACACAAGATATAGATATATTTGAAGAAAATGTAGATGTAATTCAAGTTGGAGCTAGAAA CATGCAAAACTTTGATTTATTAAAAGAATTAGGTAAAACAAATAAAACAATACTTTTAAAAAGAGGATTATCTGCTACAA TTGAAGAGTGGCTAATGTCAGCAGAGTATATAATGGCTGGAGGAAATGAAAATGTAGTTCTTTGTGAAAGAGGTATAAGA ACTTTTGAAACATATACTAGAAATACTTTGGATTTAAGTGCAATTTTAGCTGTGAAGAAACTTAGTCATTTACCAGTTAT AGTTGACCCAAGTCATGCAGCAGGTAAATCATGGATGGTTGACTCTTTATCTAAGGCAGCAATTGCAGTTGGAGCAGATG GTCTAATAATCGAAGTTCATAATGACCCAGCACATGCACTTTGTGATGGAAAACAATCGATTAAGCCAAATGAATATGAT GAATTGATAAGTGAATTAAAGACTATCGCATCAGCAGTTGGTAGAGAAATATAA
Upstream 100 bases:
>100_bases TATATAAGATTTAGTGCTTGATAGATTATTTTAGAGAACTCATTAGTGAGTTCTCTTTTTTATTTTAAATATAAAATTAT AATATTGGGAGGTAGTAAAA
Downstream 100 bases:
>100_bases TCTATAAAAGGATGGTTAAACGTGGAAGAAAAACTATTAGTAAATTTAAAAGAAAATAGCTACAATATATTTATTAAAAA AAATATACTAAAGAATATAG
Product: 3-deoxy-7-phosphoheptulonate synthase
Products: NA
Alternate protein names: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; DAHP synthase; Phospho-2-keto-3-deoxyheptonate aldolase [H]
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MIVVLKMGADKNEVKKLIEAIGREGVEVNPIDGTELTVLGLVGDTSKIDAKRIEANKVVEKVMHVVEPFKKANRKFHPEP SIINVNGMEIGSKKIAMIAGPCSVETEDQIVSIAKDVKKSGAGFLRGGAFKPRTSPYAFQGLKYDGLDLLKKAKEKTGLP IVTEIMSTQDIDIFEENVDVIQVGARNMQNFDLLKELGKTNKTILLKRGLSATIEEWLMSAEYIMAGGNENVVLCERGIR TFETYTRNTLDLSAILAVKKLSHLPVIVDPSHAAGKSWMVDSLSKAAIAVGADGLIIEVHNDPAHALCDGKQSIKPNEYD ELISELKTIASAVGREI
Sequences:
>Translated_337_residues MIVVLKMGADKNEVKKLIEAIGREGVEVNPIDGTELTVLGLVGDTSKIDAKRIEANKVVEKVMHVVEPFKKANRKFHPEP SIINVNGMEIGSKKIAMIAGPCSVETEDQIVSIAKDVKKSGAGFLRGGAFKPRTSPYAFQGLKYDGLDLLKKAKEKTGLP IVTEIMSTQDIDIFEENVDVIQVGARNMQNFDLLKELGKTNKTILLKRGLSATIEEWLMSAEYIMAGGNENVVLCERGIR TFETYTRNTLDLSAILAVKKLSHLPVIVDPSHAAGKSWMVDSLSKAAIAVGADGLIIEVHNDPAHALCDGKQSIKPNEYD ELISELKTIASAVGREI >Mature_337_residues MIVVLKMGADKNEVKKLIEAIGREGVEVNPIDGTELTVLGLVGDTSKIDAKRIEANKVVEKVMHVVEPFKKANRKFHPEP SIINVNGMEIGSKKIAMIAGPCSVETEDQIVSIAKDVKKSGAGFLRGGAFKPRTSPYAFQGLKYDGLDLLKKAKEKTGLP IVTEIMSTQDIDIFEENVDVIQVGARNMQNFDLLKELGKTNKTILLKRGLSATIEEWLMSAEYIMAGGNENVVLCERGIR TFETYTRNTLDLSAILAVKKLSHLPVIVDPSHAAGKSWMVDSLSKAAIAVGADGLIIEVHNDPAHALCDGKQSIKPNEYD ELISELKTIASAVGREI
Specific function: Catalyzes the condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) [H]
COG id: COG2876
COG function: function code E; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I DAHP synthase family [H]
Homologues:
Organism=Escherichia coli, GI1787466, Length=210, Percent_Identity=29.0476190476191, Blast_Score=92, Evalue=6e-20,
Paralogues:
None
Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR006218 - InterPro: IPR006268 [H]
Pfam domain/function: PF00793 DAHP_synth_1 [H]
EC number: =2.5.1.54 [H]
Molecular weight: Translated: 36691; Mature: 36691
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVVLKMGADKNEVKKLIEAIGREGVEVNPIDGTELTVLGLVGDTSKIDAKRIEANKVVE CEEEEECCCCHHHHHHHHHHHCCCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH KVMHVVEPFKKANRKFHPEPSIINVNGMEIGSKKIAMIAGPCSVETEDQIVSIAKDVKKS HHHHHHHHHHHCCCCCCCCCCEEEECCCEECCCEEEEEECCCCCCCHHHHHHHHHHHHHC GAGFLRGGAFKPRTSPYAFQGLKYDGLDLLKKAKEKTGLPIVTEIMSTQDIDIFEENVDV CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCHHHHCCCCE IQVGARNMQNFDLLKELGKTNKTILLKRGLSATIEEWLMSAEYIMAGGNENVVLCERGIR EEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHEEECCCCCEEEECCCCH TFETYTRNTLDLSAILAVKKLSHLPVIVDPSHAAGKSWMVDSLSKAAIAVGADGLIIEVH HHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHEEECCCEEEEEEC NDPAHALCDGKQSIKPNEYDELISELKTIASAVGREI CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MIVVLKMGADKNEVKKLIEAIGREGVEVNPIDGTELTVLGLVGDTSKIDAKRIEANKVVE CEEEEECCCCHHHHHHHHHHHCCCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH KVMHVVEPFKKANRKFHPEPSIINVNGMEIGSKKIAMIAGPCSVETEDQIVSIAKDVKKS HHHHHHHHHHHCCCCCCCCCCEEEECCCEECCCEEEEEECCCCCCCHHHHHHHHHHHHHC GAGFLRGGAFKPRTSPYAFQGLKYDGLDLLKKAKEKTGLPIVTEIMSTQDIDIFEENVDV CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCHHHHCCCCE IQVGARNMQNFDLLKELGKTNKTILLKRGLSATIEEWLMSAEYIMAGGNENVVLCERGIR EEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHEEECCCCCEEEECCCCH TFETYTRNTLDLSAILAVKKLSHLPVIVDPSHAAGKSWMVDSLSKAAIAVGADGLIIEVH HHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHEEECCCEEEEEEC NDPAHALCDGKQSIKPNEYDELISELKTIASAVGREI CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571; 12743122 [H]