Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

Click here to switch to the map view.

The map label for this gene is 126699377

Identifier: 126699377

GI number: 126699377

Start: 2045829

End: 2046998

Strand: Direct

Name: 126699377

Synonym: CD1768

Alternate gene names: NA

Gene position: 2045829-2046998 (Clockwise)

Preceding gene: 126699376

Following gene: 126699378

Centisome position: 47.69

GC content: 35.3

Gene sequence:

>1170_bases
ATGGAGAAGTTAACAGACAGGAGACAGGTTAAGGCAGTAAGCATGGAAACCTTCATTTTCCTAATATTACTAGTAGTTGG
TTTTGGGTATGTTGGTAGTATTATGGGAGCAGGAATGATGTTCAAAGTAATAATGAGTACAGCACATGCTTTACTATTGG
AGACAGTTTTCTTAATTATGGCTATGGCAGTTCTTGCAGGCGCATTAAGCGCACTACTTTCAGAGTTTGGAGTAATAGCG
TTAATTAATAAAATTTTCGCTGTATTTATGAAGCCTTTATATGGACTACCTGGTGCTAGTATAGCAGGAGCTATAACAAC
TTATTTATCAGATAATCCAGCTATTATACCTTTTGCTAAAGATAAAACATTCACACAGTATTTTAAACAATACCAAGTTC
CAGCATTATGTAACTTAGGAACAGCCTTTGGTATGGGACTTATCTTAACAACATTTATGATTTCTCAAGGTACAGAATAT
GTACTTCCAGCATTAATTGGTAATTTAGGTGCAATTATAGGTAGTGTCATAAGTGTTAGAATAATGTTGACATTTACTAA
GAAGTTTTATAAATACAATCCGGAAGAAGATAAAGCAACAGGAACATTAGAGAAAAAGGATGAATTTAGAGAAATCAGAG
AAGGAAATGTATTTCAAAGAGCTTTAGATGCAATTCTTGAAGGTGGTAAAATGGGGGTAGATATGGGAATGGCTATAATT
CCTGGAGTCCTAGTAGTATGTACATTGGTGATGTTATTAACTTTTGGACCATCTACAGACCCTGTTACAGGTCAAGAAGT
TTATACAGGAGCTGCATATGAAGGAATAAAATTACTTCCAGTTATTGGAGATAAACTTGGATTTATATTAGAACCATTAT
TTGGATTTACATCACCAGAGGCAATAGCATTCCCTATAACTTCATTGGGAGCTGTTGGTGCAGCAATGTCTCTAGTTCCA
GAGTTTATAAAGTCAGGAGCTATAACTCCTAATGATATAGCAGTATTTACAGCTATGGGTATGTGTTGGAGTGGATATTT
AAGTACACATATTGGTATGATGGATGCATTAAATGCTAGACAGTTGGCAGGTAAAGCTATTCTTTCTCATACAATAGGTG
GTTTATGTGCAGGAGCAGCTGCTCACTTTATATTTACACTCGTAGGATAA

Upstream 100 bases:

>100_bases
ATGACAAATAAAGTTGCAAATAGTAATACTTATAAGTATAATTAAAAAAGAGAAAAGGTTTTGTTAAACTTTATAACAAA
AAAAGAAGGGATGATTCAAA

Downstream 100 bases:

>100_bases
ATGTAATCAGCTAAGATAAAAAATAATATACAAAAAAATGGTTGTTGATATGTAATAAGAATTTACATATCAACAACCAT
TTTTTTCTGACTAAAGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MEKLTDRRQVKAVSMETFIFLILLVVGFGYVGSIMGAGMMFKVIMSTAHALLLETVFLIMAMAVLAGALSALLSEFGVIA
LINKIFAVFMKPLYGLPGASIAGAITTYLSDNPAIIPFAKDKTFTQYFKQYQVPALCNLGTAFGMGLILTTFMISQGTEY
VLPALIGNLGAIIGSVISVRIMLTFTKKFYKYNPEEDKATGTLEKKDEFREIREGNVFQRALDAILEGGKMGVDMGMAII
PGVLVVCTLVMLLTFGPSTDPVTGQEVYTGAAYEGIKLLPVIGDKLGFILEPLFGFTSPEAIAFPITSLGAVGAAMSLVP
EFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDALNARQLAGKAILSHTIGGLCAGAAAHFIFTLVG

Sequences:

>Translated_389_residues
MEKLTDRRQVKAVSMETFIFLILLVVGFGYVGSIMGAGMMFKVIMSTAHALLLETVFLIMAMAVLAGALSALLSEFGVIA
LINKIFAVFMKPLYGLPGASIAGAITTYLSDNPAIIPFAKDKTFTQYFKQYQVPALCNLGTAFGMGLILTTFMISQGTEY
VLPALIGNLGAIIGSVISVRIMLTFTKKFYKYNPEEDKATGTLEKKDEFREIREGNVFQRALDAILEGGKMGVDMGMAII
PGVLVVCTLVMLLTFGPSTDPVTGQEVYTGAAYEGIKLLPVIGDKLGFILEPLFGFTSPEAIAFPITSLGAVGAAMSLVP
EFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDALNARQLAGKAILSHTIGGLCAGAAAHFIFTLVG
>Mature_389_residues
MEKLTDRRQVKAVSMETFIFLILLVVGFGYVGSIMGAGMMFKVIMSTAHALLLETVFLIMAMAVLAGALSALLSEFGVIA
LINKIFAVFMKPLYGLPGASIAGAITTYLSDNPAIIPFAKDKTFTQYFKQYQVPALCNLGTAFGMGLILTTFMISQGTEY
VLPALIGNLGAIIGSVISVRIMLTFTKKFYKYNPEEDKATGTLEKKDEFREIREGNVFQRALDAILEGGKMGVDMGMAII
PGVLVVCTLVMLLTFGPSTDPVTGQEVYTGAAYEGIKLLPVIGDKLGFILEPLFGFTSPEAIAFPITSLGAVGAAMSLVP
EFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDALNARQLAGKAILSHTIGGLCAGAAAHFIFTLVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41420; Mature: 41420

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLTDRRQVKAVSMETFIFLILLVVGFGYVGSIMGAGMMFKVIMSTAHALLLETVFLIM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMAVLAGALSALLSEFGVIALINKIFAVFMKPLYGLPGASIAGAITTYLSDNPAIIPFAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECC
DKTFTQYFKQYQVPALCNLGTAFGMGLILTTFMISQGTEYVLPALIGNLGAIIGSVISVR
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IMLTFTKKFYKYNPEEDKATGTLEKKDEFREIREGNVFQRALDAILEGGKMGVDMGMAII
HHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHH
PGVLVVCTLVMLLTFGPSTDPVTGQEVYTGAAYEGIKLLPVIGDKLGFILEPLFGFTSPE
HHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHCCEEEEHHHHHHHHHHHHHHHCCCCCC
AIAFPITSLGAVGAAMSLVPEFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDALNAR
CEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLAGKAILSHTIGGLCAGAAAHFIFTLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEKLTDRRQVKAVSMETFIFLILLVVGFGYVGSIMGAGMMFKVIMSTAHALLLETVFLIM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMAVLAGALSALLSEFGVIALINKIFAVFMKPLYGLPGASIAGAITTYLSDNPAIIPFAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECC
DKTFTQYFKQYQVPALCNLGTAFGMGLILTTFMISQGTEYVLPALIGNLGAIIGSVISVR
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IMLTFTKKFYKYNPEEDKATGTLEKKDEFREIREGNVFQRALDAILEGGKMGVDMGMAII
HHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHH
PGVLVVCTLVMLLTFGPSTDPVTGQEVYTGAAYEGIKLLPVIGDKLGFILEPLFGFTSPE
HHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHCCEEEEHHHHHHHHHHHHHHHCCCCCC
AIAFPITSLGAVGAAMSLVPEFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDALNAR
CEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLAGKAILSHTIGGLCAGAAAHFIFTLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA