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The map label for this gene is yddE [C]

Identifier: 126699370

GI number: 126699370

Start: 2039553

End: 2040335

Strand: Direct

Name: yddE [C]

Synonym: CD1761

Alternate gene names: 126699370

Gene position: 2039553-2040335 (Clockwise)

Preceding gene: 126699369

Following gene: 126699371

Centisome position: 47.54

GC content: 31.67

Gene sequence:

>783_bases
ATGGAATACTACATAGTTGATTCATTTGCAACTAAACTATTTAAAGGAAATCCTGCTGGAGTTTGTGTTCTTGACAGAAG
AATACCTTTAGAGTTAATGCAGAAAATAGCAGAAGAAAACAATTTACCAGAAACAGCATTTGTAGTTAAAGGTAAAGGAA
ATTATGAATTACGATGGTTTACTCCTAAAGCAGAAATTGATTTATGTGGTCATGCAACTTTAGCAGCAGCTTATGTAATA
TCAAATTTTATTGATGTTAATGTAAAAAAGATAGATTTCTTTACTCAAAGTGGAAAGCTTGAAGTTACACGAAATGGAAA
TCTATATGAAATGATATTTCCAGAAATAATGCCTATTGAAATAGAGTTATCACCGCAACAAGCTAATTTGATAGGCTGTG
TACCAAGTGATGTTTATTCTTCAAGAGATTTAATCTTATTGCTAAACAGTGAACAAGAAGTTATAAATTATAAACCTAAT
TACGCACAATTGCGTAAATTGACAGACTGGTTAGGTATAATAATCACAGCACAAGGAAGTAATACAGATTTTGTATCAAG
ATATTTTTGTCCAGAATTAGATTCAGAAGACCCTGTTACTGGTTCATCACATTGTAATCTTATTCCATACTGGTCTGAAA
AGTTGGGAAAACACAAAATGGTAGCTGCTCAACTTTCTAATCGTGGTGGTATAATTCAGTGTGAAGTGTTGAAGGATAAT
ACTGTAAAAATTTCTGGTGAAGCAGTCTTGTTTATGCAGGGAACAATAAAGATTGATATTTAA

Upstream 100 bases:

>100_bases
GTTGTTGAACAGAGTAATATTAAAAAATATATGTAAGAAATTTAAAGTTTTATTGAATGTAAATTGATGTATATTTTATG
TTAGAAAGAGAGGTTAAATA

Downstream 100 bases:

>100_bases
ATAAGTATAATAACTAATTTATTATGAAAAATAATTAATTTTCTTAGTGTTAACAATAATAAAGTAGAGTTAAAAAACTT
GATTTCACTTAAATCAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKGKGNYELRWFTPKAEIDLCGHATLAAAYVI
SNFIDVNVKKIDFFTQSGKLEVTRNGNLYEMIFPEIMPIEIELSPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKPN
YAQLRKLTDWLGIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYWSEKLGKHKMVAAQLSNRGGIIQCEVLKDN
TVKISGEAVLFMQGTIKIDI

Sequences:

>Translated_260_residues
MEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKGKGNYELRWFTPKAEIDLCGHATLAAAYVI
SNFIDVNVKKIDFFTQSGKLEVTRNGNLYEMIFPEIMPIEIELSPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKPN
YAQLRKLTDWLGIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYWSEKLGKHKMVAAQLSNRGGIIQCEVLKDN
TVKISGEAVLFMQGTIKIDI
>Mature_260_residues
MEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKGKGNYELRWFTPKAEIDLCGHATLAAAYVI
SNFIDVNVKKIDFFTQSGKLEVTRNGNLYEMIFPEIMPIEIELSPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKPN
YAQLRKLTDWLGIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYWSEKLGKHKMVAAQLSNRGGIIQCEVLKDN
TVKISGEAVLFMQGTIKIDI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=282, Percent_Identity=35.4609929078014, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI74316009, Length=246, Percent_Identity=35.3658536585366, Blast_Score=126, Evalue=2e-29,
Organism=Escherichia coli, GI1787737, Length=297, Percent_Identity=26.5993265993266, Blast_Score=78, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17542160, Length=311, Percent_Identity=34.4051446945338, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542154, Length=311, Percent_Identity=34.4051446945338, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542158, Length=311, Percent_Identity=32.1543408360129, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=311, Percent_Identity=32.1543408360129, Blast_Score=126, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6321818, Length=286, Percent_Identity=27.972027972028, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29210; Mature: 29210

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKGKGNYELRWF
CEEEEEEHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEE
TPKAEIDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNGNLYEMIFPEIMPIE
CCCCCEEECCCHHHHHHHHHHHHHCCEEEEEEEEECCCEEEEEECCCEEEEECCCEEEEE
IELSPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKPNYAQLRKLTDWLGIIITAQGS
EEECCCCCEEEEECCHHHCCCCCEEEEECCCCCEEECCCCHHHHHHHHCEEEEEEEECCC
NTDFVSRYFCPELDSEDPVTGSSHCNLIPYWSEKLGKHKMVAAQLSNRGGIIQCEVLKDN
CCCHHHEECCCCCCCCCCCCCCCCCEEEECHHHHCCCCEEEEEECCCCCCEEEEEEECCC
TVKISGEAVLFMQGTIKIDI
EEEEECCEEEEEEEEEEEEC
>Mature Secondary Structure
MEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKGKGNYELRWF
CEEEEEEHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEE
TPKAEIDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNGNLYEMIFPEIMPIE
CCCCCEEECCCHHHHHHHHHHHHHCCEEEEEEEEECCCEEEEEECCCEEEEECCCEEEEE
IELSPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKPNYAQLRKLTDWLGIIITAQGS
EEECCCCCEEEEECCHHHCCCCCEEEEECCCCCEEECCCCHHHHHHHHCEEEEEEEECCC
NTDFVSRYFCPELDSEDPVTGSSHCNLIPYWSEKLGKHKMVAAQLSNRGGIIQCEVLKDN
CCCHHHEECCCCCCCCCCCCCCCCCEEEECHHHHCCCCEEEEEECCCCCCEEEEEEECCC
TVKISGEAVLFMQGTIKIDI
EEEEECCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]