| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699292
Identifier: 126699292
GI number: 126699292
Start: 1959655
End: 1960329
Strand: Direct
Name: 126699292
Synonym: CD1686
Alternate gene names: NA
Gene position: 1959655-1960329 (Clockwise)
Preceding gene: 126699291
Following gene: 126699293
Centisome position: 45.68
GC content: 23.41
Gene sequence:
>675_bases ATGAATAACAATGAAGACAGAATTGACAAATTTTTAGAACTTCAAAGCAAAGGATTTAAATTTGCAGAGATAGCTCAAAA TCTAAAGATTAGTCAAAGTACTTTAAGAACTTTTTTAAATAAAAAAGGATATAAGTCAGAAAAAGGTAAATACATATTAA AAGACGAATTAAATTATAATAAAAGTTTGGATAATAGAAACTTGGAAGAAGAGAAAGCTAAGGAGTATGAAAAAAGTAAA AAGAATACTATAAGTAATAGAAAAAAAGTAAGCACCAAAAAAAAGATTTCTAATGAAAAGGCTTTAAGTAAAAGTGTTGA ACAAATTGAGTTTAATGATACAGGTTTAAAAAATGCAAAGCCAAAACAAAATATTAAGCCTAAGAAAGATAGAAAAATAA ATATAACTCAAGAAGATTTAGATAAGCTTTGTGAAGTATATGATTGGTATTTAGAAGTAAAAGATTACAATATAAAGCCT AAAAAAATATCTAATAAAAAAGATGTACATATAGATGATGAACACATAGATGAATTAAAAACAACAAGAATACGTATAGA TAAAGAAATATGGAATGATTTTGAAAGATTATGTAGTAATTCGAATTTTGAAAAACATCAAATACTTACACAGGCATTGA AAGAATTTATGAAAAAGTATAAAAATCTACTATAA
Upstream 100 bases:
>100_bases CTACAAAAAATAATTGAATCAAATAGAGTAGATTTAGAAAAGAAGAATATAATAAGAAGTATGAAAAGAAAGACAAGAAG ATGTTGACGGAGGAATATTA
Downstream 100 bases:
>100_bases AATACTACTATATGAGGTGCTTAATATGAATAAAATAGTAAAAAAATCAATTTCTCTAATGATTATATTAACAATATTTA TTTTTATGTTGACAGCATGT
Product: DNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MNNNEDRIDKFLELQSKGFKFAEIAQNLKISQSTLRTFLNKKGYKSEKGKYILKDELNYNKSLDNRNLEEEKAKEYEKSK KNTISNRKKVSTKKKISNEKALSKSVEQIEFNDTGLKNAKPKQNIKPKKDRKINITQEDLDKLCEVYDWYLEVKDYNIKP KKISNKKDVHIDDEHIDELKTTRIRIDKEIWNDFERLCSNSNFEKHQILTQALKEFMKKYKNLL
Sequences:
>Translated_224_residues MNNNEDRIDKFLELQSKGFKFAEIAQNLKISQSTLRTFLNKKGYKSEKGKYILKDELNYNKSLDNRNLEEEKAKEYEKSK KNTISNRKKVSTKKKISNEKALSKSVEQIEFNDTGLKNAKPKQNIKPKKDRKINITQEDLDKLCEVYDWYLEVKDYNIKP KKISNKKDVHIDDEHIDELKTTRIRIDKEIWNDFERLCSNSNFEKHQILTQALKEFMKKYKNLL >Mature_224_residues MNNNEDRIDKFLELQSKGFKFAEIAQNLKISQSTLRTFLNKKGYKSEKGKYILKDELNYNKSLDNRNLEEEKAKEYEKSK KNTISNRKKVSTKKKISNEKALSKSVEQIEFNDTGLKNAKPKQNIKPKKDRKINITQEDLDKLCEVYDWYLEVKDYNIKP KKISNKKDVHIDDEHIDELKTTRIRIDKEIWNDFERLCSNSNFEKHQILTQALKEFMKKYKNLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26731; Mature: 26731
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNNEDRIDKFLELQSKGFKFAEIAQNLKISQSTLRTFLNKKGYKSEKGKYILKDELNYN CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCC KSLDNRNLEEEKAKEYEKSKKNTISNRKKVSTKKKISNEKALSKSVEQIEFNDTGLKNAK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PKQNIKPKKDRKINITQEDLDKLCEVYDWYLEVKDYNIKPKKISNKKDVHIDDEHIDELK CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCHHHHHHHH TTRIRIDKEIWNDFERLCSNSNFEKHQILTQALKEFMKKYKNLL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNNNEDRIDKFLELQSKGFKFAEIAQNLKISQSTLRTFLNKKGYKSEKGKYILKDELNYN CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCC KSLDNRNLEEEKAKEYEKSKKNTISNRKKVSTKKKISNEKALSKSVEQIEFNDTGLKNAK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PKQNIKPKKDRKINITQEDLDKLCEVYDWYLEVKDYNIKPKKISNKKDVHIDDEHIDELK CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCHHHHHHHH TTRIRIDKEIWNDFERLCSNSNFEKHQILTQALKEFMKKYKNLL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA