| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699291
Identifier: 126699291
GI number: 126699291
Start: 1958913
End: 1959641
Strand: Direct
Name: 126699291
Synonym: CD1685
Alternate gene names: NA
Gene position: 1958913-1959641 (Clockwise)
Preceding gene: 126699290
Following gene: 126699292
Centisome position: 45.66
GC content: 23.59
Gene sequence:
>729_bases ATGATGTTTGATAGGGGAAAATGGAATAAATTGGATTATAATGAACTTTTAGAATATATGATGTCTATACAAGATATAAA ATATAGAGATTTTAATAAAAAGCTTATACCTGGAACAGAAAATATAATAGGTATTAGAGTTCCTAATTTAAGAAAGTTAT CAAAAGAAATAAGCCAAGGAAATTGGAAGGAATTTTTAGAAGTAGCAGAGGATACATACTATGAAGAAGTTAGGCTACAA GGTATGGTAATTGGCAATATAAATAGTAATTTTGAAGAAACTTTATACTATGTAAAAAGATTTATACCTAAAATCGATAA TTGGTCAGTTTGCGATGGATTTTGTTCTGATTTAAAGTCTGTTAAAAAATATAAAGAAAATATGTATGATATACTTAAAA AATATGTTTATTCAAAGAATCCATGGGAAATTAGATTTGCATTAGTTATGTTTTTAATATATTATGTTGATGATAAACAT ATTAAAGAAATATTTGAATACTGTAATAATATACAAAGTGAAGAATATTATGTTAAAATGGGTATGGCATGGTTGCTATC AATTTGTTTTATTAAATGTGAAGAGGAAACTTTTCTCTATATAAAAAATAATAATTTAGATGATTTCACTTATAATAAAA TGCTACAAAAAATAATTGAATCAAATAGAGTAGATTTAGAAAAGAAGAATATAATAAGAAGTATGAAAAGAAAGACAAGA AGATGTTGA
Upstream 100 bases:
>100_bases GAAAAGTTTCTTATGTTTTTGAAAAAGCTTCTAATAGTTAGAAGCTTTTTTTGTAGAGTTTTATGTTACAATAAGAAAAA AGGAATTAAGGAGCAATTAA
Downstream 100 bases:
>100_bases CGGAGGAATATTAATGAATAACAATGAAGACAGAATTGACAAATTTTTAGAACTTCAAAGCAAAGGATTTAAATTTGCAG AGATAGCTCAAAATCTAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MMFDRGKWNKLDYNELLEYMMSIQDIKYRDFNKKLIPGTENIIGIRVPNLRKLSKEISQGNWKEFLEVAEDTYYEEVRLQ GMVIGNINSNFEETLYYVKRFIPKIDNWSVCDGFCSDLKSVKKYKENMYDILKKYVYSKNPWEIRFALVMFLIYYVDDKH IKEIFEYCNNIQSEEYYVKMGMAWLLSICFIKCEEETFLYIKNNNLDDFTYNKMLQKIIESNRVDLEKKNIIRSMKRKTR RC
Sequences:
>Translated_242_residues MMFDRGKWNKLDYNELLEYMMSIQDIKYRDFNKKLIPGTENIIGIRVPNLRKLSKEISQGNWKEFLEVAEDTYYEEVRLQ GMVIGNINSNFEETLYYVKRFIPKIDNWSVCDGFCSDLKSVKKYKENMYDILKKYVYSKNPWEIRFALVMFLIYYVDDKH IKEIFEYCNNIQSEEYYVKMGMAWLLSICFIKCEEETFLYIKNNNLDDFTYNKMLQKIIESNRVDLEKKNIIRSMKRKTR RC >Mature_242_residues MMFDRGKWNKLDYNELLEYMMSIQDIKYRDFNKKLIPGTENIIGIRVPNLRKLSKEISQGNWKEFLEVAEDTYYEEVRLQ GMVIGNINSNFEETLYYVKRFIPKIDNWSVCDGFCSDLKSVKKYKENMYDILKKYVYSKNPWEIRFALVMFLIYYVDDKH IKEIFEYCNNIQSEEYYVKMGMAWLLSICFIKCEEETFLYIKNNNLDDFTYNKMLQKIIESNRVDLEKKNIIRSMKRKTR RC
Specific function: Unknown
COG id: COG4912
COG function: function code L; Predicted DNA alkylation repair enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29455; Mature: 29455
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMFDRGKWNKLDYNELLEYMMSIQDIKYRDFNKKLIPGTENIIGIRVPNLRKLSKEISQG CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCC NWKEFLEVAEDTYYEEVRLQGMVIGNINSNFEETLYYVKRFIPKIDNWSVCDGFCSDLKS CHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VKKYKENMYDILKKYVYSKNPWEIRFALVMFLIYYVDDKHIKEIFEYCNNIQSEEYYVKM HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHH GMAWLLSICFIKCEEETFLYIKNNNLDDFTYNKMLQKIIESNRVDLEKKNIIRSMKRKTR HHHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC RC CC >Mature Secondary Structure MMFDRGKWNKLDYNELLEYMMSIQDIKYRDFNKKLIPGTENIIGIRVPNLRKLSKEISQG CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCC NWKEFLEVAEDTYYEEVRLQGMVIGNINSNFEETLYYVKRFIPKIDNWSVCDGFCSDLKS CHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VKKYKENMYDILKKYVYSKNPWEIRFALVMFLIYYVDDKHIKEIFEYCNNIQSEEYYVKM HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHH GMAWLLSICFIKCEEETFLYIKNNNLDDFTYNKMLQKIIESNRVDLEKKNIIRSMKRKTR HHHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC RC CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA