| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yclQ [H]
Identifier: 126699254
GI number: 126699254
Start: 1912289
End: 1913254
Strand: Direct
Name: yclQ [H]
Synonym: CD1650
Alternate gene names: 126699254
Gene position: 1912289-1913254 (Clockwise)
Preceding gene: 126699253
Following gene: 126699255
Centisome position: 44.57
GC content: 26.92
Gene sequence:
>966_bases ATGAATAAAAAAGCAGCAATAGTAGCAGCAATAGCTATTATAGGATTAGTGACAGTGTTTGCATTAGGTGGAAGTAAAAA GAATGAATCAAAAACATCAGAAAATTCAAATAATACCATAAAGATAACTCATAACTTGGGAGAAACAGATGTAAAATTAA ATCCTAAAAAAGTAGTAGTATTTGATTATTCGGCTTTAGATACAATGGATGCATTAGGTGTAGCTGAGAATTTAGTAGGA CTTCCAAAAGCGAGTTTACCAGCATCTTTAGAAAAATATAAGGATAAGAAGTATACAGATTTAGGAGGCTTAAAAGAACC AGATTTAGAAGGTATAAAGTCGGCAAATCCAGATTTAATTATAATAAATGGAAGACAAGAAGATTTTTATGAGCAATTGT CAAAAATAGCACCAACAATAAGTACAAGTAAAGATGATAAGAAGTACTTAGAATCTGTTAAAAATAATATAGACAAAATA GCAAAAATATTTGGAGTAGAAGAAAAAGCAAATCAAGAATTTAGTAAAATTGAAAAGAAAATAGAAACTTTGAATAAAAA AGTAACAGATAAAAATTTAAATGCTTTAACTATAATGGTAAATGAAGGTAATTTAAGTGTATTTGGTGAAGAATCAAGAT TTAGTATATTATACAATAGTTTTGGATTTGAAAATAAAGATAAAAATATAAAAGAATCAAGTCATGGACAAAATATTACT TTTGAATATATAGCTAAACAAAATCCAGAAGTTATGTTCGTTATAGATAGAGGAATAGCTACTGGCAGTGATGTAAAAGA AAGCTCAACTGCAAAATCTGTTTTGAACAATGATATAATAAAATCTATGGATGCATATAAGAATGATAATATAATATATT TAGATTCACCAACATGGTATGTAAATGATGGTGGTCTAACATCTTTAAATAAAATGATAGATGATGCTTCAAAAGCGGTA AATTAA
Upstream 100 bases:
>100_bases TATTTTTAAAATATTGTATATGAAAATAAACTTGCTATATGATTTTTTATAAAGTTTTTAAATTAAAATAAAGATTAATA GGAGAGAGGAAAATATTGAT
Downstream 100 bases:
>100_bases TAATCCGATATAATTAATCAAAATGTATTTTTTATAAAATGATTATCAAATAAACTAGGAGTTTTTAAGAACTCCTAGTT TATTTTTTGCATAAAAAAGA
Product: iron compound ABC transporter substrate-binding protein
Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MNKKAAIVAAIAIIGLVTVFALGGSKKNESKTSENSNNTIKITHNLGETDVKLNPKKVVVFDYSALDTMDALGVAENLVG LPKASLPASLEKYKDKKYTDLGGLKEPDLEGIKSANPDLIIINGRQEDFYEQLSKIAPTISTSKDDKKYLESVKNNIDKI AKIFGVEEKANQEFSKIEKKIETLNKKVTDKNLNALTIMVNEGNLSVFGEESRFSILYNSFGFENKDKNIKESSHGQNIT FEYIAKQNPEVMFVIDRGIATGSDVKESSTAKSVLNNDIIKSMDAYKNDNIIYLDSPTWYVNDGGLTSLNKMIDDASKAV N
Sequences:
>Translated_321_residues MNKKAAIVAAIAIIGLVTVFALGGSKKNESKTSENSNNTIKITHNLGETDVKLNPKKVVVFDYSALDTMDALGVAENLVG LPKASLPASLEKYKDKKYTDLGGLKEPDLEGIKSANPDLIIINGRQEDFYEQLSKIAPTISTSKDDKKYLESVKNNIDKI AKIFGVEEKANQEFSKIEKKIETLNKKVTDKNLNALTIMVNEGNLSVFGEESRFSILYNSFGFENKDKNIKESSHGQNIT FEYIAKQNPEVMFVIDRGIATGSDVKESSTAKSVLNNDIIKSMDAYKNDNIIYLDSPTWYVNDGGLTSLNKMIDDASKAV N >Mature_321_residues MNKKAAIVAAIAIIGLVTVFALGGSKKNESKTSENSNNTIKITHNLGETDVKLNPKKVVVFDYSALDTMDALGVAENLVG LPKASLPASLEKYKDKKYTDLGGLKEPDLEGIKSANPDLIIINGRQEDFYEQLSKIAPTISTSKDDKKYLESVKNNIDKI AKIFGVEEKANQEFSKIEKKIETLNKKVTDKNLNALTIMVNEGNLSVFGEESRFSILYNSFGFENKDKNIKESSHGQNIT FEYIAKQNPEVMFVIDRGIATGSDVKESSTAKSVLNNDIIKSMDAYKNDNIIYLDSPTWYVNDGGLTSLNKMIDDASKAV N
Specific function: Probably part of an ABC transporter complex [H]
COG id: COG4607
COG function: function code P; ABC-type enterochelin transport system, periplasmic component
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002491 [H]
Pfam domain/function: PF01497 Peripla_BP_2 [H]
EC number: NA
Molecular weight: Translated: 35380; Mature: 35380
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKAAIVAAIAIIGLVTVFALGGSKKNESKTSENSNNTIKITHNLGETDVKLNPKKVVV CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCEEEE FDYSALDTMDALGVAENLVGLPKASLPASLEKYKDKKYTDLGGLKEPDLEGIKSANPDLI EECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCEE IINGRQEDFYEQLSKIAPTISTSKDDKKYLESVKNNIDKIAKIFGVEEKANQEFSKIEKK EEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH IETLNKKVTDKNLNALTIMVNEGNLSVFGEESRFSILYNSFGFENKDKNIKESSHGQNIT HHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEE FEYIAKQNPEVMFVIDRGIATGSDVKESSTAKSVLNNDIIKSMDAYKNDNIIYLDSPTWY EEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEE VNDGGLTSLNKMIDDASKAVN ECCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MNKKAAIVAAIAIIGLVTVFALGGSKKNESKTSENSNNTIKITHNLGETDVKLNPKKVVV CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCEEEE FDYSALDTMDALGVAENLVGLPKASLPASLEKYKDKKYTDLGGLKEPDLEGIKSANPDLI EECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCEE IINGRQEDFYEQLSKIAPTISTSKDDKKYLESVKNNIDKIAKIFGVEEKANQEFSKIEKK EEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH IETLNKKVTDKNLNALTIMVNEGNLSVFGEESRFSILYNSFGFENKDKNIKESSHGQNIT HHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEE FEYIAKQNPEVMFVIDRGIATGSDVKESSTAKSVLNNDIIKSMDAYKNDNIIYLDSPTWY EEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEE VNDGGLTSLNKMIDDASKAVN ECCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]
Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969502; 9384377; 10658653 [H]