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The map label for this gene is yciR [C]

Identifier: 126699255

GI number: 126699255

Start: 1913736

End: 1915595

Strand: Direct

Name: yciR [C]

Synonym: CD1651

Alternate gene names: 126699255

Gene position: 1913736-1915595 (Clockwise)

Preceding gene: 126699254

Following gene: 126699259

Centisome position: 44.61

GC content: 25.43

Gene sequence:

>1860_bases
ATGAAGAGATTTTTGAGGAGAATTATCTTAGTTTTATTTATTTTGTTGATTTTTATAAGTTTTATTTCTATTAAATTAAT
TCATAATGTTGGAGATTATGGAAAATTGATTAATTATGTTGGGATTGTTCGTGGAGCTAGCCAACGTCTAACTAAACTAG
AGATGAATCATCAACCAAATGATGAATTAATAGAATATATTGATGAAATCCTACAGGAGTTGATTACAGGGCATGGAGAT
TATGGTTTAGTAATCACTGATTGTAATGAATACAATGAGGACTTACTTTTATTAGAAAAAAAGTGGGAAGATTTAAATAT
TGAAATTAAAAAAGTAAGAATGAAAGAACAGAATAACCAGTTATTAAGTATAAGTGAAGAGTTTTTTTCTCTTGCAAATG
ATACAGTGTTTAAAATAGAAAACTTTTCTAAAGAAAAAAGTAATTACTTAATGACTTTAATAATAATTATATCTATTATA
GGTATATTAGCATGTATCATATTGATTTTACAATATAGTAAAAAAATGGTTAGACTGGAAAAATTAAATGTAGATTTAAA
AAATATTGCATATAAAGATGAACTAACAGGAGTAAATACTATAGAAAAATTTAAATTGGATGCAAATCAAAATATTTGTA
TACATAAGGATAAGAAATTTGCTGTATTCTATATTGATTTTGAAAACTTTAAATACATTAATGATATATTTGGATATGAT
TATGGTGACATGATACTGAAAAGATATGCTAATCTTATGATGAATGACATAGGGAAATATGAAATATTTGCAAGAGAAAT
TGCAGATAGATTTGTTGCGTTAAGATGCTATGTAGATAAGGAAGATTTAGTGGTAAGACAACGAGATGTAGACAATGAAC
TAATTAATATAACAAATGAAATTAAAAATAAACATAGTATTACTGTTGTTAGTGGAATTTGTTGTATTGAAGATGTAAAT
GAAAAATTAAGTATAGATGGTTTAATAAATAGAGCAAATTTTGCACAAAAAACTGTTAAGAATAAACCAGGTACTAATTA
TGCTTTTTATAATGACAGTATTCGTAAAAAAATGATTGAAGAAAATACTATCAAGAGTAGAATACATGAAGCTATTGAAA
AAAGAGAATTTATAGTTTATTTACAGCCTAAAGTTAATTTACATAGTCAAAAAATAAATTGTGCAGAAGCTTTAGTTCGT
TGGCTTACTCCAGATAAAGGTATTATATCGCCAGCAATATTTATTCCAGTACTTGAGAAGAATTTTTTTATTGCCTTAGT
AGATAAGTATGTTTTTGAGGAGGTTTGTAAATGGATTAGAAAGAGGTTAGATGAAAATAAACCTTTTGTTCAGATATCAG
TTAATGTTTCAAGAATACAATTTTATAACACTAAATTTGTAGAAACTTATTCCAATATACAAAATAAATACAGGATACCT
AAAAATACTATAGAAATTGAATTTACAGAGAGTGTTGCTTTTGAGAATCAAAAACATCTTTTGGAAATTATACATGATTT
GCATGAAAATGGATTTACTTGTTCTTTAGATGATTTTGGAAAAGGTTATTCGTCTTTAAGTGTTTTAAAAGATTTACCAT
TTGATGTTTTAAAGCTTGACTCTATGTTTTTCAAGGCTAGTTTAGATAAAGATAAAGAGAAAATAGTAATAAAAAATATT
GTACATATGTTAAAAGAACTTAATATCACAACTGTTGCTGAAGGCATTGAATGCAAGGAACAAGTTGAATTTCTTAGGGA
TATTGGGTGTGATTTAGTTCAGGGATTTGTATTTTATAAACCAATGCCAATATTAGAATTTGAAAAAATATTGGATAAAG
AGTTTGTTTATAATAGCTAA

Upstream 100 bases:

>100_bases
TGTATAGAAAATTTATTGTAAACGCATGTATATTATTAGAAAAAATAGTTTGAAGGTATTCAATAAACATAAAAAACAAT
ATAGGGGATAAAGGTGTTTT

Downstream 100 bases:

>100_bases
AATGTACTTTATAAAATATGAACTAATTAAGTAAAATTATTTTGTACTGAATAAATTTTTACTTTATTTACAGAATAATG
ATTATTTACAGAAAAGCGCG

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 619; Mature: 619

Protein sequence:

>619_residues
MKRFLRRIILVLFILLIFISFISIKLIHNVGDYGKLINYVGIVRGASQRLTKLEMNHQPNDELIEYIDEILQELITGHGD
YGLVITDCNEYNEDLLLLEKKWEDLNIEIKKVRMKEQNNQLLSISEEFFSLANDTVFKIENFSKEKSNYLMTLIIIISII
GILACIILILQYSKKMVRLEKLNVDLKNIAYKDELTGVNTIEKFKLDANQNICIHKDKKFAVFYIDFENFKYINDIFGYD
YGDMILKRYANLMMNDIGKYEIFAREIADRFVALRCYVDKEDLVVRQRDVDNELINITNEIKNKHSITVVSGICCIEDVN
EKLSIDGLINRANFAQKTVKNKPGTNYAFYNDSIRKKMIEENTIKSRIHEAIEKREFIVYLQPKVNLHSQKINCAEALVR
WLTPDKGIISPAIFIPVLEKNFFIALVDKYVFEEVCKWIRKRLDENKPFVQISVNVSRIQFYNTKFVETYSNIQNKYRIP
KNTIEIEFTESVAFENQKHLLEIIHDLHENGFTCSLDDFGKGYSSLSVLKDLPFDVLKLDSMFFKASLDKDKEKIVIKNI
VHMLKELNITTVAEGIECKEQVEFLRDIGCDLVQGFVFYKPMPILEFEKILDKEFVYNS

Sequences:

>Translated_619_residues
MKRFLRRIILVLFILLIFISFISIKLIHNVGDYGKLINYVGIVRGASQRLTKLEMNHQPNDELIEYIDEILQELITGHGD
YGLVITDCNEYNEDLLLLEKKWEDLNIEIKKVRMKEQNNQLLSISEEFFSLANDTVFKIENFSKEKSNYLMTLIIIISII
GILACIILILQYSKKMVRLEKLNVDLKNIAYKDELTGVNTIEKFKLDANQNICIHKDKKFAVFYIDFENFKYINDIFGYD
YGDMILKRYANLMMNDIGKYEIFAREIADRFVALRCYVDKEDLVVRQRDVDNELINITNEIKNKHSITVVSGICCIEDVN
EKLSIDGLINRANFAQKTVKNKPGTNYAFYNDSIRKKMIEENTIKSRIHEAIEKREFIVYLQPKVNLHSQKINCAEALVR
WLTPDKGIISPAIFIPVLEKNFFIALVDKYVFEEVCKWIRKRLDENKPFVQISVNVSRIQFYNTKFVETYSNIQNKYRIP
KNTIEIEFTESVAFENQKHLLEIIHDLHENGFTCSLDDFGKGYSSLSVLKDLPFDVLKLDSMFFKASLDKDKEKIVIKNI
VHMLKELNITTVAEGIECKEQVEFLRDIGCDLVQGFVFYKPMPILEFEKILDKEFVYNS
>Mature_619_residues
MKRFLRRIILVLFILLIFISFISIKLIHNVGDYGKLINYVGIVRGASQRLTKLEMNHQPNDELIEYIDEILQELITGHGD
YGLVITDCNEYNEDLLLLEKKWEDLNIEIKKVRMKEQNNQLLSISEEFFSLANDTVFKIENFSKEKSNYLMTLIIIISII
GILACIILILQYSKKMVRLEKLNVDLKNIAYKDELTGVNTIEKFKLDANQNICIHKDKKFAVFYIDFENFKYINDIFGYD
YGDMILKRYANLMMNDIGKYEIFAREIADRFVALRCYVDKEDLVVRQRDVDNELINITNEIKNKHSITVVSGICCIEDVN
EKLSIDGLINRANFAQKTVKNKPGTNYAFYNDSIRKKMIEENTIKSRIHEAIEKREFIVYLQPKVNLHSQKINCAEALVR
WLTPDKGIISPAIFIPVLEKNFFIALVDKYVFEEVCKWIRKRLDENKPFVQISVNVSRIQFYNTKFVETYSNIQNKYRIP
KNTIEIEFTESVAFENQKHLLEIIHDLHENGFTCSLDDFGKGYSSLSVLKDLPFDVLKLDSMFFKASLDKDKEKIVIKNI
VHMLKELNITTVAEGIECKEQVEFLRDIGCDLVQGFVFYKPMPILEFEKILDKEFVYNS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=26.3279445727483, Blast_Score=176, Evalue=5e-45,
Organism=Escherichia coli, GI87081921, Length=397, Percent_Identity=27.2040302267003, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI226510982, Length=294, Percent_Identity=32.312925170068, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI87081743, Length=253, Percent_Identity=35.1778656126482, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=30.4347826086957, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=31.8367346938775, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=32.9317269076305, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=30.8016877637131, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1787055, Length=280, Percent_Identity=29.6428571428571, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI87082096, Length=256, Percent_Identity=27.734375, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1788502, Length=269, Percent_Identity=27.5092936802974, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788849, Length=256, Percent_Identity=26.171875, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 72464; Mature: 72464

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFLRRIILVLFILLIFISFISIKLIHNVGDYGKLINYVGIVRGASQRLTKLEMNHQPN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
DELIEYIDEILQELITGHGDYGLVITDCNEYNEDLLLLEKKWEDLNIEIKKVRMKEQNNQ
HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEEHHHHCCCC
LLSISEEFFSLANDTVFKIENFSKEKSNYLMTLIIIISIIGILACIILILQYSKKMVRLE
CEEHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLNVDLKNIAYKDELTGVNTIEKFKLDANQNICIHKDKKFAVFYIDFENFKYINDIFGYD
HHCCCHHHHEEHHHCCCCCCHHHEEECCCCCEEEEECCEEEEEEEECCCCHHHHHHHCCC
YGDMILKRYANLMMNDIGKYEIFAREIADRFVALRCYVDKEDLVVRQRDVDNELINITNE
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEECHHHHEEHHCCCCHHHHHHHHH
IKNKHSITVVSGICCIEDVNEKLSIDGLINRANFAQKTVKNKPGTNYAFYNDSIRKKMIE
HCCCCCEEEEECHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
ENTIKSRIHEAIEKREFIVYLQPKVNLHSQKINCAEALVRWLTPDKGIISPAIFIPVLEK
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHEEEHHCC
NFFIALVDKYVFEEVCKWIRKRLDENKPFVQISVNVSRIQFYNTKFVETYSNIQNKYRIP
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHCCCCC
KNTIEIEFTESVAFENQKHLLEIIHDLHENGFTCSLDDFGKGYSSLSVLKDLPFDVLKLD
CCEEEEEEEHHHHHCCHHHHHHHHHHHHCCCCEEEHHHHCCCHHHHHHHHHCCHHHHHHH
SMFFKASLDKDKEKIVIKNIVHMLKELNITTVAEGIECKEQVEFLRDIGCDLVQGFVFYK
HHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHC
PMPILEFEKILDKEFVYNS
CCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRFLRRIILVLFILLIFISFISIKLIHNVGDYGKLINYVGIVRGASQRLTKLEMNHQPN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
DELIEYIDEILQELITGHGDYGLVITDCNEYNEDLLLLEKKWEDLNIEIKKVRMKEQNNQ
HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEEHHHHCCCC
LLSISEEFFSLANDTVFKIENFSKEKSNYLMTLIIIISIIGILACIILILQYSKKMVRLE
CEEHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLNVDLKNIAYKDELTGVNTIEKFKLDANQNICIHKDKKFAVFYIDFENFKYINDIFGYD
HHCCCHHHHEEHHHCCCCCCHHHEEECCCCCEEEEECCEEEEEEEECCCCHHHHHHHCCC
YGDMILKRYANLMMNDIGKYEIFAREIADRFVALRCYVDKEDLVVRQRDVDNELINITNE
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEECHHHHEEHHCCCCHHHHHHHHH
IKNKHSITVVSGICCIEDVNEKLSIDGLINRANFAQKTVKNKPGTNYAFYNDSIRKKMIE
HCCCCCEEEEECHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
ENTIKSRIHEAIEKREFIVYLQPKVNLHSQKINCAEALVRWLTPDKGIISPAIFIPVLEK
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHEEEHHCC
NFFIALVDKYVFEEVCKWIRKRLDENKPFVQISVNVSRIQFYNTKFVETYSNIQNKYRIP
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHCCCCC
KNTIEIEFTESVAFENQKHLLEIIHDLHENGFTCSLDDFGKGYSSLSVLKDLPFDVLKLD
CCEEEEEEEHHHHHCCHHHHHHHHHHHHCCCCEEEHHHHCCCHHHHHHHHHCCHHHHHHH
SMFFKASLDKDKEKIVIKNIVHMLKELNITTVAEGIECKEQVEFLRDIGCDLVQGFVFYK
HHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHC
PMPILEFEKILDKEFVYNS
CCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]